127 related articles for article (PubMed ID: 19737408)
21. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Castrignanò T; De Meo PD; Grillo G; Liuni S; Mignone F; Talamo IG; Pesole G
Bioinformatics; 2006 Feb; 22(4):497-9. PubMed ID: 16267081
[TBL] [Abstract][Full Text] [Related]
22. Mining mammalian transcript data for functional long non-coding RNAs.
Khachane AN; Harrison PM
PLoS One; 2010 Apr; 5(4):e10316. PubMed ID: 20428234
[TBL] [Abstract][Full Text] [Related]
23. Functional region prediction with a set of appropriate homologous sequences--an index for sequence selection by integrating structure and sequence information with spatial statistics.
Nemoto W; Toh H
BMC Struct Biol; 2012 May; 12():11. PubMed ID: 22643026
[TBL] [Abstract][Full Text] [Related]
24. Conserved microsatellites may contribute to stem-loop structures in 5', 3' terminals of Ebolavirus genomes.
Li D; Zhang H; Peng S; Pan S; Tan Z
Biochem Biophys Res Commun; 2019 Jun; 514(3):726-733. PubMed ID: 31078274
[TBL] [Abstract][Full Text] [Related]
25. Flavivirus and Filovirus EvoPrinters: New alignment tools for the comparative analysis of viral evolution.
Brody T; Yavatkar AS; Park DS; Kuzin A; Ross J; Odenwald WF
PLoS Negl Trop Dis; 2017 Jun; 11(6):e0005673. PubMed ID: 28622346
[TBL] [Abstract][Full Text] [Related]
26. A compression-based approach for coding sequences identification. I. Application to prokaryotic genomes.
Menconi G; Marangoni R
J Comput Biol; 2006 Oct; 13(8):1477-88. PubMed ID: 17061923
[TBL] [Abstract][Full Text] [Related]
27. Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model.
Jayaraman G; Siddharthan R
BMC Bioinformatics; 2010 Sep; 11():464. PubMed ID: 20846408
[TBL] [Abstract][Full Text] [Related]
28. Identification of coding and non-coding sequences using local Holder exponent formalism.
Kulkarni OC; Vigneshwar R; Jayaraman VK; Kulkarni BD
Bioinformatics; 2005 Oct; 21(20):3818-23. PubMed ID: 16118261
[TBL] [Abstract][Full Text] [Related]
29. Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.
Shah AR; Oehmen CS; Harper J; Webb-Robertson BJ
Comput Biol Chem; 2007 Apr; 31(2):138-42. PubMed ID: 17416337
[TBL] [Abstract][Full Text] [Related]
30. Evolutionary fingerprinting of genes.
Pond SL; Scheffler K; Gravenor MB; Poon AF; Frost SD
Mol Biol Evol; 2010 Mar; 27(3):520-36. PubMed ID: 19864470
[TBL] [Abstract][Full Text] [Related]
31. Comparing the Statistical Fate of Paralogous and Orthologous Sequences.
Massip F; Sheinman M; Schbath S; Arndt PF
Genetics; 2016 Oct; 204(2):475-482. PubMed ID: 27474728
[TBL] [Abstract][Full Text] [Related]
32. Detection of long non-coding RNA homology, a comparative study on alignment and alignment-free metrics.
Noviello TMR; Di Liddo A; Ventola GM; Spagnuolo A; D'Aniello S; Ceccarelli M; Cerulo L
BMC Bioinformatics; 2018 Nov; 19(1):407. PubMed ID: 30400819
[TBL] [Abstract][Full Text] [Related]
33. Small fitness effect of mutations in highly conserved non-coding regions.
Kryukov GV; Schmidt S; Sunyaev S
Hum Mol Genet; 2005 Aug; 14(15):2221-9. PubMed ID: 15994173
[TBL] [Abstract][Full Text] [Related]
34. MCALIGN2: faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution.
Wang J; Keightley PD; Johnson T
BMC Bioinformatics; 2006 Jun; 7():292. PubMed ID: 16762073
[TBL] [Abstract][Full Text] [Related]
35. Genomic structure and expression of Jmjd6 and evolutionary analysis in the context of related JmjC domain containing proteins.
Hahn P; Böse J; Edler S; Lengeling A
BMC Genomics; 2008 Jun; 9():293. PubMed ID: 18564434
[TBL] [Abstract][Full Text] [Related]
36. GANN: genetic algorithm neural networks for the detection of conserved combinations of features in DNA.
Beiko RG; Charlebois RL
BMC Bioinformatics; 2005 Feb; 6():36. PubMed ID: 15725347
[TBL] [Abstract][Full Text] [Related]
37. Prediction of protein subcellular localization.
Yu CS; Chen YC; Lu CH; Hwang JK
Proteins; 2006 Aug; 64(3):643-51. PubMed ID: 16752418
[TBL] [Abstract][Full Text] [Related]
38. NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.
Rambaldi D; Guffanti A; Morandi P; Cassata G
BMC Bioinformatics; 2005 Dec; 6 Suppl 4(Suppl 4):S22. PubMed ID: 16351749
[TBL] [Abstract][Full Text] [Related]
39. A tale of two symmetrical tails: structural and functional characteristics of palindromes in proteins.
Sheari A; Kargar M; Katanforoush A; Arab S; Sadeghi M; Pezeshk H; Eslahchi C; Marashi SA
BMC Bioinformatics; 2008 Jun; 9():274. PubMed ID: 18547401
[TBL] [Abstract][Full Text] [Related]
40. Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology.
Brown JB; Akutsu T
BMC Bioinformatics; 2009 Jan; 10():25. PubMed ID: 19154573
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]