348 related articles for article (PubMed ID: 19749978)
1. Species tree inference by minimizing deep coalescences.
Than C; Nakhleh L
PLoS Comput Biol; 2009 Sep; 5(9):e1000501. PubMed ID: 19749978
[TBL] [Abstract][Full Text] [Related]
2. Consistency properties of species tree inference by minimizing deep coalescences.
Than CV; Rosenberg NA
J Comput Biol; 2011 Jan; 18(1):1-15. PubMed ID: 21210728
[TBL] [Abstract][Full Text] [Related]
3. Species Tree Estimation from Gene Trees by Minimizing Deep Coalescence and Maximizing Quartet Consistency: A Comparative Study and the Presence of Pseudo Species Tree Terraces.
Farah IT; Islam M; Zinat KT; Rahman AH; Bayzid S
Syst Biol; 2021 Oct; 70(6):1213-1231. PubMed ID: 33844023
[TBL] [Abstract][Full Text] [Related]
4. Efficient inference of bacterial strain trees from genome-scale multilocus data.
Than C; Sugino R; Innan H; Nakhleh L
Bioinformatics; 2008 Jul; 24(13):i123-31. PubMed ID: 18586704
[TBL] [Abstract][Full Text] [Related]
5. Inferring Phylogenetic Networks Using PhyloNet.
Wen D; Yu Y; Zhu J; Nakhleh L
Syst Biol; 2018 Jul; 67(4):735-740. PubMed ID: 29514307
[TBL] [Abstract][Full Text] [Related]
6. Exact solutions for species tree inference from discordant gene trees.
Chang WC; Górecki P; Eulenstein O
J Bioinform Comput Biol; 2013 Oct; 11(5):1342005. PubMed ID: 24131054
[TBL] [Abstract][Full Text] [Related]
7. Exact median-tree inference for unrooted reconciliation costs.
Górecki P; Markin A; Eulenstein O
BMC Evol Biol; 2020 Oct; 20(Suppl 1):136. PubMed ID: 33115401
[TBL] [Abstract][Full Text] [Related]
8. Unconstrained Diameters for Deep Coalescence.
Pawel Gorecki P; Paszek J; Eulenstein O
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(5):1002-1012. PubMed ID: 26887001
[TBL] [Abstract][Full Text] [Related]
9. Statistical inconsistency of the unrooted minimize deep coalescence criterion.
Alanzi AAR; Degnan JH
PLoS One; 2021; 16(5):e0251107. PubMed ID: 33970931
[TBL] [Abstract][Full Text] [Related]
10. Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles.
Yu Y; Warnow T; Nakhleh L
J Comput Biol; 2011 Nov; 18(11):1543-59. PubMed ID: 22035329
[TBL] [Abstract][Full Text] [Related]
11. Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.
Chaudhary R; Burleigh JG; Fernández-Baca D
Algorithms Mol Biol; 2013 Nov; 8(1):28. PubMed ID: 24180377
[TBL] [Abstract][Full Text] [Related]
12. From gene trees to species trees II: species tree inference by minimizing deep coalescence events.
Zhang L
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1685-91. PubMed ID: 21576759
[TBL] [Abstract][Full Text] [Related]
13. SIESTA: enhancing searches for optimal supertrees and species trees.
Vachaspati P; Warnow T
BMC Genomics; 2018 May; 19(Suppl 5):252. PubMed ID: 29745851
[TBL] [Abstract][Full Text] [Related]
14. Inferring Optimal Species Trees in the Presence of Gene Duplication and Loss: Beyond Rooted Gene Trees.
Bayzid MS
J Comput Biol; 2023 Feb; 30(2):161-175. PubMed ID: 36251762
[TBL] [Abstract][Full Text] [Related]
15. Mathematical properties of the deep coalescence cost.
Than CV; Rosenberg NA
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(1):61-72. PubMed ID: 23702544
[TBL] [Abstract][Full Text] [Related]
16. Towards improving searches for optimal phylogenies.
Ford E; St John K; Wheeler WC
Syst Biol; 2015 Jan; 64(1):56-65. PubMed ID: 25164916
[TBL] [Abstract][Full Text] [Related]
17. Consensus properties for the deep coalescence problem and their application for scalable tree search.
Lin HT; Burleigh JG; Eulenstein O
BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S12. PubMed ID: 22759417
[TBL] [Abstract][Full Text] [Related]
18. imPhy: Imputing Phylogenetic Trees with Missing Information Using Mathematical Programming.
Yasui N; Vogiatzis C; Yoshida R; Fukumizu K
IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(4):1222-1230. PubMed ID: 30507538
[TBL] [Abstract][Full Text] [Related]
19. Clustering Genes of Common Evolutionary History.
Gori K; Suchan T; Alvarez N; Goldman N; Dessimoz C
Mol Biol Evol; 2016 Jun; 33(6):1590-605. PubMed ID: 26893301
[TBL] [Abstract][Full Text] [Related]
20. Reconstructing a SuperGeneTree minimizing reconciliation.
Lafond M; Ouangraoua A; El-Mabrouk N
BMC Bioinformatics; 2015; 16 Suppl 14(Suppl 14):S4. PubMed ID: 26451911
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]