321 related articles for article (PubMed ID: 19752006)
1. IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation.
Tsou CC; Tsai CF; Tsui YH; Sudhir PR; Wang YT; Chen YJ; Chen JY; Sung TY; Hsu WL
Mol Cell Proteomics; 2010 Jan; 9(1):131-44. PubMed ID: 19752006
[TBL] [Abstract][Full Text] [Related]
2. MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC-MS.
Tsou CC; Tsui YH; Yian YH; Chen YJ; Yang HY; Yu CY; Lynn KS; Chen YJ; Sung TY; Hsu WL
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W661-9. PubMed ID: 19528069
[TBL] [Abstract][Full Text] [Related]
3. Enhanced peptide quantification using spectral count clustering and cluster abundance.
Lee S; Kwon MS; Lee HJ; Paik YK; Tang H; Lee JK; Park T
BMC Bioinformatics; 2011 Oct; 12():423. PubMed ID: 22034872
[TBL] [Abstract][Full Text] [Related]
4. The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.
Braisted JC; Kuntumalla S; Vogel C; Marcotte EM; Rodrigues AR; Wang R; Huang ST; Ferlanti ES; Saeed AI; Fleischmann RD; Peterson SN; Pieper R
BMC Bioinformatics; 2008 Dec; 9():529. PubMed ID: 19068132
[TBL] [Abstract][Full Text] [Related]
5. A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry.
Aoshima K; Takahashi K; Ikawa M; Kimura T; Fukuda M; Tanaka S; Parry HE; Fujita Y; Yoshizawa AC; Utsunomiya S; Kajihara S; Tanaka K; Oda Y
BMC Bioinformatics; 2014 Nov; 15(1):376. PubMed ID: 25420746
[TBL] [Abstract][Full Text] [Related]
6. A new algorithm using cross-assignment for label-free quantitation with LC-LTQ-FT MS.
Andreev VP; Li L; Cao L; Gu Y; Rejtar T; Wu SL; Karger BL
J Proteome Res; 2007 Jun; 6(6):2186-94. PubMed ID: 17441747
[TBL] [Abstract][Full Text] [Related]
7. LFQuant: a label-free fast quantitative analysis tool for high-resolution LC-MS/MS proteomics data.
Zhang W; Zhang J; Xu C; Li N; Liu H; Ma J; Zhu Y; Xie H
Proteomics; 2012 Dec; 12(23-24):3475-84. PubMed ID: 23081734
[TBL] [Abstract][Full Text] [Related]
8. Automated generic analysis tools for protein quantitation using stable isotope labeling.
Hsu WL; Sung TY
Methods Mol Biol; 2010; 604():257-72. PubMed ID: 20013376
[TBL] [Abstract][Full Text] [Related]
9. Epsilon-Q: An Automated Analyzer Interface for Mass Spectral Library Search and Label-Free Protein Quantification.
Cho JY; Lee HJ; Jeong SK; Paik YK
J Proteome Res; 2017 Dec; 16(12):4435-4445. PubMed ID: 28299940
[TBL] [Abstract][Full Text] [Related]
10. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.
Heller M; Ye M; Michel PE; Morier P; Stalder D; Jünger MA; Aebersold R; Reymond F; Rossier JS
J Proteome Res; 2005; 4(6):2273-82. PubMed ID: 16335976
[TBL] [Abstract][Full Text] [Related]
11. iMet-Q: A User-Friendly Tool for Label-Free Metabolomics Quantitation Using Dynamic Peak-Width Determination.
Chang HY; Chen CT; Lih TM; Lynn KS; Juo CG; Hsu WL; Sung TY
PLoS One; 2016; 11(1):e0146112. PubMed ID: 26784691
[TBL] [Abstract][Full Text] [Related]
12. Exploring skyline for both MS(E) -based label-free proteomics and HRMS quantitation of small molecules.
Liu S; Chen X; Yan Z; Qin S; Xu J; Lin J; Yang C; Shui W
Proteomics; 2014 Feb; 14(2-3):169-80. PubMed ID: 24307133
[TBL] [Abstract][Full Text] [Related]
13. Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.
Tu C; Sheng Q; Li J; Ma D; Shen X; Wang X; Shyr Y; Yi Z; Qu J
J Proteome Res; 2015 Nov; 14(11):4662-73. PubMed ID: 26390080
[TBL] [Abstract][Full Text] [Related]
14. iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm.
Chang HY; Chen CT; Ko CL; Chen YJ; Chen YJ; Hsu WL; Juo CG; Sung TY
Anal Chem; 2017 Dec; 89(24):13128-13136. PubMed ID: 29165996
[TBL] [Abstract][Full Text] [Related]
15. Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes.
Wang G; Wu WW; Zeng W; Chou CL; Shen RF
J Proteome Res; 2006 May; 5(5):1214-23. PubMed ID: 16674111
[TBL] [Abstract][Full Text] [Related]
16. Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.
Bouyssié D; Gonzalez de Peredo A; Mouton E; Albigot R; Roussel L; Ortega N; Cayrol C; Burlet-Schiltz O; Girard JP; Monsarrat B
Mol Cell Proteomics; 2007 Sep; 6(9):1621-37. PubMed ID: 17533220
[TBL] [Abstract][Full Text] [Related]
17. MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed Proteins.
Ammar C; Gruber M; Csaba G; Zimmer R
Mol Cell Proteomics; 2019 Sep; 18(9):1880-1892. PubMed ID: 31235637
[TBL] [Abstract][Full Text] [Related]
18. MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
LaMarche BL; Crowell KL; Jaitly N; Petyuk VA; Shah AR; Polpitiya AD; Sandoval JD; Kiebel GR; Monroe ME; Callister SJ; Metz TO; Anderson GA; Smith RD
BMC Bioinformatics; 2013 Feb; 14():49. PubMed ID: 23398735
[TBL] [Abstract][Full Text] [Related]
19. Multi-Q: a fully automated tool for multiplexed protein quantitation.
Lin WT; Hung WN; Yian YH; Wu KP; Han CL; Chen YR; Chen YJ; Sung TY; Hsu WL
J Proteome Res; 2006 Sep; 5(9):2328-38. PubMed ID: 16944945
[TBL] [Abstract][Full Text] [Related]
20. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
