158 related articles for article (PubMed ID: 19765306)
1. Finding local communities in protein networks.
Voevodski K; Teng SH; Xia Y
BMC Bioinformatics; 2009 Sep; 10():297. PubMed ID: 19765306
[TBL] [Abstract][Full Text] [Related]
2. Spectral affinity in protein networks.
Voevodski K; Teng SH; Xia Y
BMC Syst Biol; 2009 Nov; 3():112. PubMed ID: 19943959
[TBL] [Abstract][Full Text] [Related]
3. Identification of Protein Complexes Using Weighted PageRank-Nibble Algorithm and Core-Attachment Structure.
Peng W; Wang J; Zhao B; Wang L
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(1):179-92. PubMed ID: 26357088
[TBL] [Abstract][Full Text] [Related]
4. IsoRankN: spectral methods for global alignment of multiple protein networks.
Liao CS; Lu K; Baym M; Singh R; Berger B
Bioinformatics; 2009 Jun; 25(12):i253-8. PubMed ID: 19477996
[TBL] [Abstract][Full Text] [Related]
5. The function of communities in protein interaction networks at multiple scales.
Lewis AC; Jones NS; Porter MA; Deane CM
BMC Syst Biol; 2010 Jul; 4():100. PubMed ID: 20649971
[TBL] [Abstract][Full Text] [Related]
6. Discovering large conserved functional components in global network alignment by graph matching.
Zhu Y; Li Y; Liu J; Qin L; Yu JX
BMC Genomics; 2018 Sep; 19(Suppl 7):670. PubMed ID: 30255780
[TBL] [Abstract][Full Text] [Related]
7. APPINetwork: an R package for building and computational analysis of protein-protein interaction networks.
Gosset S; Glatigny A; Gallopin M; Yi Z; Salé M; Mucchielli-Giorgi MH
PeerJ; 2022; 10():e14204. PubMed ID: 36353604
[TBL] [Abstract][Full Text] [Related]
8. Topological and functional comparison of community detection algorithms in biological networks.
Rahiminejad S; Maurya MR; Subramaniam S
BMC Bioinformatics; 2019 Apr; 20(1):212. PubMed ID: 31029085
[TBL] [Abstract][Full Text] [Related]
9. L-GRAAL: Lagrangian graphlet-based network aligner.
Malod-Dognin N; Pržulj N
Bioinformatics; 2015 Jul; 31(13):2182-9. PubMed ID: 25725498
[TBL] [Abstract][Full Text] [Related]
10. C-element: a new clustering algorithm to find high quality functional modules in PPI networks.
Ghasemi M; Rahgozar M; Bidkhori G; Masoudi-Nejad A
PLoS One; 2013; 8(9):e72366. PubMed ID: 24039752
[TBL] [Abstract][Full Text] [Related]
11. Constructing a robust protein-protein interaction network by integrating multiple public databases.
Martha VS; Liu Z; Guo L; Su Z; Ye Y; Fang H; Ding D; Tong W; Xu X
BMC Bioinformatics; 2011 Oct; 12 Suppl 10(Suppl 10):S7. PubMed ID: 22165958
[TBL] [Abstract][Full Text] [Related]
12. ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks.
Li G; Li M; Zhang Y; Wang D; Li R; Guimerà R; Gao JT; Zhang MQ
PLoS One; 2014; 9(5):e94608. PubMed ID: 24788790
[TBL] [Abstract][Full Text] [Related]
13. RRW: repeated random walks on genome-scale protein networks for local cluster discovery.
Macropol K; Can T; Singh AK
BMC Bioinformatics; 2009 Sep; 10():283. PubMed ID: 19740439
[TBL] [Abstract][Full Text] [Related]
14. From communities to protein complexes: A local community detection algorithm on PPI networks.
Dilmaghani S; Brust MR; Ribeiro CHC; Kieffer E; Danoy G; Bouvry P
PLoS One; 2022; 17(1):e0260484. PubMed ID: 35085263
[TBL] [Abstract][Full Text] [Related]
15. Detection of functional modules from protein interaction networks with an enhanced random walk based algorithm.
Cai B; Wang H; Zheng H; Wang H
Int J Comput Biol Drug Des; 2011; 4(3):290-306. PubMed ID: 21778561
[TBL] [Abstract][Full Text] [Related]
16. Fuse: multiple network alignment via data fusion.
Gligorijević V; Malod-Dognin N; Pržulj N
Bioinformatics; 2016 Apr; 32(8):1195-203. PubMed ID: 26668003
[TBL] [Abstract][Full Text] [Related]
17. Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.
Vlasblom J; Wodak SJ
BMC Bioinformatics; 2009 Mar; 10():99. PubMed ID: 19331680
[TBL] [Abstract][Full Text] [Related]
18. Detangling PPI networks to uncover functionally meaningful clusters.
Hall-Swan S; Crawford J; Newman R; Cowen LJ
BMC Syst Biol; 2018 Mar; 12(Suppl 3):24. PubMed ID: 29589565
[TBL] [Abstract][Full Text] [Related]
19. Decision tree classifier based on topological characteristics of subgraph for the mining of protein complexes from large scale PPI networks.
Sahoo TR; Patra S; Vipsita S
Comput Biol Chem; 2023 Oct; 106():107935. PubMed ID: 37536230
[TBL] [Abstract][Full Text] [Related]
20. MCF: a tool to find multi-scale community profiles in biological networks.
Gao S; Chen A; Rahmani A; Jarada T; Alhajj R; Demetrick D; Zeng J
Comput Methods Programs Biomed; 2013 Dec; 112(3):665-72. PubMed ID: 24075082
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]