These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

213 related articles for article (PubMed ID: 19783351)

  • 1. Quantitative assignment of reaction directionality in constraint-based models of metabolism: application to Escherichia coli.
    Fleming RM; Thiele I; Nasheuer HP
    Biophys Chem; 2009 Dec; 145(2-3):47-56. PubMed ID: 19783351
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction.
    Haraldsdóttir HS; Thiele I; Fleming RM
    Biophys J; 2012 Apr; 102(8):1703-11. PubMed ID: 22768925
    [TBL] [Abstract][Full Text] [Related]  

  • 3. von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models.
    Fleming RM; Thiele I
    Bioinformatics; 2011 Jan; 27(1):142-3. PubMed ID: 21115436
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks.
    De Martino D; Figliuzzi M; De Martino A; Marinari E
    PLoS Comput Biol; 2012; 8(6):e1002562. PubMed ID: 22737065
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Systematic assignment of thermodynamic constraints in metabolic network models.
    Kümmel A; Panke S; Heinemann M
    BMC Bioinformatics; 2006 Nov; 7():512. PubMed ID: 17123434
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Development of thermodynamic optimum searching (TOS) to improve the prediction accuracy of flux balance analysis.
    Zhu Y; Song J; Xu Z; Sun J; Zhang Y; Li Y; Ma Y
    Biotechnol Bioeng; 2013 Mar; 110(3):914-23. PubMed ID: 23042478
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Thermodynamics-based metabolic flux analysis.
    Henry CS; Broadbelt LJ; Hatzimanikatis V
    Biophys J; 2007 Mar; 92(5):1792-805. PubMed ID: 17172310
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Genome-scale thermodynamic analysis of Escherichia coli metabolism.
    Henry CS; Jankowski MD; Broadbelt LJ; Hatzimanikatis V
    Biophys J; 2006 Feb; 90(4):1453-61. PubMed ID: 16299075
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Pathway thermodynamics highlights kinetic obstacles in central metabolism.
    Noor E; Bar-Even A; Flamholz A; Reznik E; Liebermeister W; Milo R
    PLoS Comput Biol; 2014 Feb; 10(2):e1003483. PubMed ID: 24586134
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models.
    Cotten C; Reed JL
    BMC Bioinformatics; 2013 Jan; 14():32. PubMed ID: 23360254
    [TBL] [Abstract][Full Text] [Related]  

  • 11. How reliable are thermodynamic feasibility statements of biochemical pathways?
    Maskow T; von Stockar U
    Biotechnol Bioeng; 2005 Oct; 92(2):223-30. PubMed ID: 15962336
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Quantitative assessment of thermodynamic constraints on the solution space of genome-scale metabolic models.
    Hamilton JJ; Dwivedi V; Reed JL
    Biophys J; 2013 Jul; 105(2):512-22. PubMed ID: 23870272
    [TBL] [Abstract][Full Text] [Related]  

  • 13. pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis.
    Salvy P; Fengos G; Ataman M; Pathier T; Soh KC; Hatzimanikatis V
    Bioinformatics; 2019 Jan; 35(1):167-169. PubMed ID: 30561545
    [TBL] [Abstract][Full Text] [Related]  

  • 14. OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli.
    Hädicke O; von Kamp A; Aydogan T; Klamt S
    PLoS Comput Biol; 2018 Sep; 14(9):e1006492. PubMed ID: 30248096
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An integrated open framework for thermodynamics of reactions that combines accuracy and coverage.
    Noor E; Bar-Even A; Flamholz A; Lubling Y; Davidi D; Milo R
    Bioinformatics; 2012 Aug; 28(15):2037-44. PubMed ID: 22645166
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An algorithm for the reduction of genome-scale metabolic network models to meaningful core models.
    Erdrich P; Steuer R; Klamt S
    BMC Syst Biol; 2015 Aug; 9():48. PubMed ID: 26286864
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Modelling overflow metabolism in Escherichia coli with flux balance analysis incorporating differential proteomic efficiencies of energy pathways.
    Zeng H; Yang A
    BMC Syst Biol; 2019 Jan; 13(1):3. PubMed ID: 30630470
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Construction of an E. Coli genome-scale atom mapping model for MFA calculations.
    Ravikirthi P; Suthers PF; Maranas CD
    Biotechnol Bioeng; 2011 Jun; 108(6):1372-82. PubMed ID: 21328316
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An upper limit on Gibbs energy dissipation governs cellular metabolism.
    Niebel B; Leupold S; Heinemann M
    Nat Metab; 2019 Jan; 1(1):125-132. PubMed ID: 32694810
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-scale analysis to the impact of gene deletion on the metabolism of E. coli: constraint-based simulation approach.
    Xu Z; Sun X; Yu S
    BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S62. PubMed ID: 19208166
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.