These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

174 related articles for article (PubMed ID: 19797408)

  • 21. Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation.
    Ettwiller L; Paten B; Ramialison M; Birney E; Wittbrodt J
    Nat Methods; 2007 Jul; 4(7):563-5. PubMed ID: 17589518
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A general approach for discriminative de novo motif discovery from high-throughput data.
    Grau J; Posch S; Grosse I; Keilwagen J
    Nucleic Acids Res; 2013 Nov; 41(21):e197. PubMed ID: 24057214
    [TBL] [Abstract][Full Text] [Related]  

  • 23. AMD, an automated motif discovery tool using stepwise refinement of gapped consensuses.
    Shi J; Yang W; Chen M; Du Y; Zhang J; Wang K
    PLoS One; 2011; 6(9):e24576. PubMed ID: 21931761
    [TBL] [Abstract][Full Text] [Related]  

  • 24. W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data.
    Chen X; Guo L; Fan Z; Jiang T
    Bioinformatics; 2008 May; 24(9):1121-8. PubMed ID: 18325926
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Cistrome: an integrative platform for transcriptional regulation studies.
    Liu T; Ortiz JA; Taing L; Meyer CA; Lee B; Zhang Y; Shin H; Wong SS; Ma J; Lei Y; Pape UJ; Poidinger M; Chen Y; Yeung K; Brown M; Turpaz Y; Liu XS
    Genome Biol; 2011 Aug; 12(8):R83. PubMed ID: 21859476
    [TBL] [Abstract][Full Text] [Related]  

  • 26. ChIPseek, a web-based analysis tool for ChIP data.
    Chen TW; Li HP; Lee CC; Gan RC; Huang PJ; Wu TH; Lee CY; Chang YF; Tang P
    BMC Genomics; 2014 Jun; 15(1):539. PubMed ID: 24974934
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets.
    Vishnevsky OV; Bocharnikov AV; Kolchanov NA
    J Bioinform Comput Biol; 2018 Feb; 16(1):1740012. PubMed ID: 29281953
    [TBL] [Abstract][Full Text] [Related]  

  • 28. MYBS: a comprehensive web server for mining transcription factor binding sites in yeast.
    Tsai HK; Chou MY; Shih CH; Huang GT; Chang TH; Li WH
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W221-6. PubMed ID: 17537814
    [TBL] [Abstract][Full Text] [Related]  

  • 29. MEME SUITE: tools for motif discovery and searching.
    Bailey TL; Boden M; Buske FA; Frith M; Grant CE; Clementi L; Ren J; Li WW; Noble WS
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W202-8. PubMed ID: 19458158
    [TBL] [Abstract][Full Text] [Related]  

  • 30. RSAT::Plants: Motif Discovery in ChIP-Seq Peaks of Plant Genomes.
    Castro-Mondragon JA; Rioualen C; Contreras-Moreira B; van Helden J
    Methods Mol Biol; 2016; 1482():297-322. PubMed ID: 27557775
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Discovering motifs in ranked lists of DNA sequences.
    Eden E; Lipson D; Yogev S; Yakhini Z
    PLoS Comput Biol; 2007 Mar; 3(3):e39. PubMed ID: 17381235
    [TBL] [Abstract][Full Text] [Related]  

  • 32. SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences.
    Agostini F; Cirillo D; Ponti RD; Tartaglia GG
    BMC Genomics; 2014 Oct; 15(1):925. PubMed ID: 25341390
    [TBL] [Abstract][Full Text] [Related]  

  • 33. FIMO: scanning for occurrences of a given motif.
    Grant CE; Bailey TL; Noble WS
    Bioinformatics; 2011 Apr; 27(7):1017-8. PubMed ID: 21330290
    [TBL] [Abstract][Full Text] [Related]  

  • 34. WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches.
    Romer KA; Kayombya GR; Fraenkel E
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W217-20. PubMed ID: 17584794
    [TBL] [Abstract][Full Text] [Related]  

  • 35. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Liu XS; Brutlag DL; Liu JS
    Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404
    [TBL] [Abstract][Full Text] [Related]  

  • 36. HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing.
    Larsson E; Lindahl P; Mostad P
    BMC Bioinformatics; 2007 Oct; 8():418. PubMed ID: 17963524
    [TBL] [Abstract][Full Text] [Related]  

  • 37. MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs.
    Kato M; Tsunoda T
    BMC Bioinformatics; 2007 Mar; 8():100. PubMed ID: 17378935
    [TBL] [Abstract][Full Text] [Related]  

  • 38. DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.
    Saad C; Noé L; Richard H; Leclerc J; Buisine MP; Touzet H; Figeac M
    BMC Bioinformatics; 2018 Jun; 19(1):223. PubMed ID: 29890948
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MotifSuite: workflow for probabilistic motif detection and assessment.
    Claeys M; Storms V; Sun H; Michoel T; Marchal K
    Bioinformatics; 2012 Jul; 28(14):1931-2. PubMed ID: 22592380
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Sequential Integration of Fuzzy Clustering and Expectation Maximization for Transcription Factor Binding Site Identification.
    Yousefian-Jazi A; Choi J
    J Comput Biol; 2018 Nov; 25(11):1247-1256. PubMed ID: 30133315
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.