These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 19822731)

  • 1. Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation.
    Gilchrist MA; Shah P; Zaretzki R
    Genetics; 2009 Dec; 183(4):1493-505. PubMed ID: 19822731
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Combining models of protein translation and population genetics to predict protein production rates from codon usage patterns.
    Gilchrist MA
    Mol Biol Evol; 2007 Nov; 24(11):2362-72. PubMed ID: 17703051
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A model of protein translation including codon bias, nonsense errors, and ribosome recycling.
    Gilchrist MA; Wagner A
    J Theor Biol; 2006 Apr; 239(4):417-34. PubMed ID: 16171830
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone.
    Gilchrist MA; Chen WC; Shah P; Landerer CL; Zaretzki R
    Genome Biol Evol; 2015 May; 7(6):1559-79. PubMed ID: 25977456
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Accounting for Programmed Ribosomal Frameshifting in the Computation of Codon Usage Bias Indices.
    Garcia V; Zoller S; Anisimova M
    G3 (Bethesda); 2018 Oct; 8(10):3173-3183. PubMed ID: 30111621
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Synonymous codon usage in Escherichia coli: selection for translational accuracy.
    Stoletzki N; Eyre-Walker A
    Mol Biol Evol; 2007 Feb; 24(2):374-81. PubMed ID: 17101719
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift.
    Shah P; Gilchrist MA
    Proc Natl Acad Sci U S A; 2011 Jun; 108(25):10231-6. PubMed ID: 21646514
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Effect of correlated tRNA abundances on translation errors and evolution of codon usage bias.
    Shah P; Gilchrist MA
    PLoS Genet; 2010 Sep; 6(9):e1001128. PubMed ID: 20862306
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Converting nonsense codons into sense codons by targeted pseudouridylation.
    Karijolich J; Yu YT
    Nature; 2011 Jun; 474(7351):395-8. PubMed ID: 21677757
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantifying shifts in natural selection on codon usage between protein regions: a population genetics approach.
    Cope AL; Gilchrist MA
    BMC Genomics; 2022 May; 23(1):408. PubMed ID: 35637464
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias.
    de Oliveira JL; Morales AC; Hurst LD; Urrutia AO; Thompson CRL; Wolf JB
    Mol Biol Evol; 2021 Jul; 38(8):3247-3266. PubMed ID: 33871580
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Codon-Resolution Analysis Reveals a Direct and Context-Dependent Impact of Individual Synonymous Mutations on mRNA Level.
    Chen S; Li K; Cao W; Wang J; Zhao T; Huan Q; Yang YF; Wu S; Qian W
    Mol Biol Evol; 2017 Nov; 34(11):2944-2958. PubMed ID: 28961875
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance.
    Zhang Z; Li J; Cui P; Ding F; Li A; Townsend JP; Yu J
    BMC Bioinformatics; 2012 Mar; 13():43. PubMed ID: 22435713
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Analysis of computational codon usage models and their association with translationally slow codons.
    Wright G; Rodriguez A; Li J; Clark PL; Milenković T; Emrich SJ
    PLoS One; 2020; 15(4):e0232003. PubMed ID: 32352987
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evolution of Codon Usage Bias in Diatoms.
    Krasovec M; Filatov DA
    Genes (Basel); 2019 Nov; 10(11):. PubMed ID: 31698749
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Poor codon optimality as a signal to degrade transcripts with frameshifts.
    Schikora-Tamarit MÀ; Carey LB
    Transcription; 2018; 9(5):327-333. PubMed ID: 30105929
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gene Amplification as a Mechanism of Yeast Adaptation to Nonsense Mutations in Release Factor Genes.
    Maksiutenko EM; Barbitoff YA; Matveenko AG; Moskalenko SE; Zhouravleva GA
    Genes (Basel); 2021 Dec; 12(12):. PubMed ID: 34946968
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Selection for minimization of translational frameshifting errors as a factor in the evolution of codon usage.
    Huang Y; Koonin EV; Lipman DJ; Przytycka TM
    Nucleic Acids Res; 2009 Nov; 37(20):6799-810. PubMed ID: 19745054
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Limitations of codon adaptation index and other coding DNA-based features for prediction of protein expression in Saccharomyces cerevisiae.
    Friberg M; von Rohr P; Gonnet G
    Yeast; 2004 Oct; 21(13):1083-93. PubMed ID: 15484285
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Codon usage characterization and phylogenetic analysis of the mitochondrial genome in Hemerocallis citrina.
    Zhang K; Wang Y; Zhang Y; Shan X
    BMC Genom Data; 2024 Jan; 25(1):6. PubMed ID: 38218810
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.