BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

302 related articles for article (PubMed ID: 19823881)

  • 1. A fast protein-ligand docking algorithm based on hydrogen bond matching and surface shape complementarity.
    Luo W; Pei J; Zhu Y
    J Mol Model; 2010 May; 16(5):903-13. PubMed ID: 19823881
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PRL-Dock: protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling.
    Wu MY; Dai DQ; Yan H
    Proteins; 2012 Aug; 80(9):2137-53. PubMed ID: 22544808
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PLHINT: A knowledge-driven computational approach based on the intermolecular H bond interactions at the protein-ligand interface from docking solutions.
    Kumar SP
    J Mol Graph Model; 2018 Jan; 79():194-212. PubMed ID: 29241118
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy.
    Wu Y; Brooks CL
    J Chem Inf Model; 2021 Nov; 61(11):5535-5549. PubMed ID: 34704754
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PSI-DOCK: towards highly efficient and accurate flexible ligand docking.
    Pei J; Wang Q; Liu Z; Li Q; Yang K; Lai L
    Proteins; 2006 Mar; 62(4):934-46. PubMed ID: 16395666
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Development and validation of a modular, extensible docking program: DOCK 5.
    Moustakas DT; Lang PT; Pegg S; Pettersen E; Kuntz ID; Brooijmans N; Rizzo RC
    J Comput Aided Mol Des; 2006; 20(10-11):601-19. PubMed ID: 17149653
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparative study of several algorithms for flexible ligand docking.
    Bursulaya BD; Totrov M; Abagyan R; Brooks CL
    J Comput Aided Mol Des; 2003 Nov; 17(11):755-63. PubMed ID: 15072435
    [TBL] [Abstract][Full Text] [Related]  

  • 8. pso@autodock: a fast flexible molecular docking program based on Swarm intelligence.
    Namasivayam V; Günther R
    Chem Biol Drug Des; 2007 Dec; 70(6):475-84. PubMed ID: 17986206
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY; Zou X
    Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MS-DOCK: accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening.
    Sauton N; Lagorce D; Villoutreix BO; Miteva MA
    BMC Bioinformatics; 2008 Apr; 9():184. PubMed ID: 18402678
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fragment-Based flexible ligand docking by evolutionary optimization.
    Budin N; Majeux N; Caflisch A
    Biol Chem; 2001 Sep; 382(9):1365-72. PubMed ID: 11688719
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Flexible ligand docking using conformational ensembles.
    Lorber DM; Shoichet BK
    Protein Sci; 1998 Apr; 7(4):938-50. PubMed ID: 9568900
    [TBL] [Abstract][Full Text] [Related]  

  • 14. istar: a web platform for large-scale protein-ligand docking.
    Li H; Leung KS; Ballester PJ; Wong MH
    PLoS One; 2014; 9(1):e85678. PubMed ID: 24475049
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rational automatic search method for stable docking models of protein and ligand.
    Mizutani MY; Tomioka N; Itai A
    J Mol Biol; 1994 Oct; 243(2):310-26. PubMed ID: 7932757
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A fast surface-matching procedure for protein-ligand docking.
    Yamagishi ME; Martins NF; Neshich G; Cai W; Shao X; Beautrait A; Maigret B
    J Mol Model; 2006 Sep; 12(6):965-72. PubMed ID: 16673083
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.
    Meyer M; Wilson P; Schomburg D
    J Mol Biol; 1996 Nov; 264(1):199-210. PubMed ID: 8950278
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Examination of shape complementarity in docking of unbound proteins.
    Norel R; Petrey D; Wolfson HJ; Nussinov R
    Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein Alpha Shape (PAS) Dock: a new gaussian-based score function suitable for docking in homology modelled protein structures.
    Tøndel K; Anderssen E; Drabløs F
    J Comput Aided Mol Des; 2006 Mar; 20(3):131-44. PubMed ID: 16652207
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Flexible ligand docking: a multistep strategy approach.
    Wang J; Kollman PA; Kuntz ID
    Proteins; 1999 Jul; 36(1):1-19. PubMed ID: 10373002
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.