302 related articles for article (PubMed ID: 19823881)
1. A fast protein-ligand docking algorithm based on hydrogen bond matching and surface shape complementarity.
Luo W; Pei J; Zhu Y
J Mol Model; 2010 May; 16(5):903-13. PubMed ID: 19823881
[TBL] [Abstract][Full Text] [Related]
2. PRL-Dock: protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling.
Wu MY; Dai DQ; Yan H
Proteins; 2012 Aug; 80(9):2137-53. PubMed ID: 22544808
[TBL] [Abstract][Full Text] [Related]
3. PLHINT: A knowledge-driven computational approach based on the intermolecular H bond interactions at the protein-ligand interface from docking solutions.
Kumar SP
J Mol Graph Model; 2018 Jan; 79():194-212. PubMed ID: 29241118
[TBL] [Abstract][Full Text] [Related]
4. Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy.
Wu Y; Brooks CL
J Chem Inf Model; 2021 Nov; 61(11):5535-5549. PubMed ID: 34704754
[TBL] [Abstract][Full Text] [Related]
5. PSI-DOCK: towards highly efficient and accurate flexible ligand docking.
Pei J; Wang Q; Liu Z; Li Q; Yang K; Lai L
Proteins; 2006 Mar; 62(4):934-46. PubMed ID: 16395666
[TBL] [Abstract][Full Text] [Related]
6. Development and validation of a modular, extensible docking program: DOCK 5.
Moustakas DT; Lang PT; Pegg S; Pettersen E; Kuntz ID; Brooijmans N; Rizzo RC
J Comput Aided Mol Des; 2006; 20(10-11):601-19. PubMed ID: 17149653
[TBL] [Abstract][Full Text] [Related]
7. Comparative study of several algorithms for flexible ligand docking.
Bursulaya BD; Totrov M; Abagyan R; Brooks CL
J Comput Aided Mol Des; 2003 Nov; 17(11):755-63. PubMed ID: 15072435
[TBL] [Abstract][Full Text] [Related]
8. pso@autodock: a fast flexible molecular docking program based on Swarm intelligence.
Namasivayam V; Günther R
Chem Biol Drug Des; 2007 Dec; 70(6):475-84. PubMed ID: 17986206
[TBL] [Abstract][Full Text] [Related]
9. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
Huang SY; Zou X
Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
[TBL] [Abstract][Full Text] [Related]
10. MS-DOCK: accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening.
Sauton N; Lagorce D; Villoutreix BO; Miteva MA
BMC Bioinformatics; 2008 Apr; 9():184. PubMed ID: 18402678
[TBL] [Abstract][Full Text] [Related]
11. Fragment-Based flexible ligand docking by evolutionary optimization.
Budin N; Majeux N; Caflisch A
Biol Chem; 2001 Sep; 382(9):1365-72. PubMed ID: 11688719
[TBL] [Abstract][Full Text] [Related]
12. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
Taylor RD; Jewsbury PJ; Essex JW
J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
[TBL] [Abstract][Full Text] [Related]
13. Flexible ligand docking using conformational ensembles.
Lorber DM; Shoichet BK
Protein Sci; 1998 Apr; 7(4):938-50. PubMed ID: 9568900
[TBL] [Abstract][Full Text] [Related]
14. istar: a web platform for large-scale protein-ligand docking.
Li H; Leung KS; Ballester PJ; Wong MH
PLoS One; 2014; 9(1):e85678. PubMed ID: 24475049
[TBL] [Abstract][Full Text] [Related]
15. Rational automatic search method for stable docking models of protein and ligand.
Mizutani MY; Tomioka N; Itai A
J Mol Biol; 1994 Oct; 243(2):310-26. PubMed ID: 7932757
[TBL] [Abstract][Full Text] [Related]
16. A fast surface-matching procedure for protein-ligand docking.
Yamagishi ME; Martins NF; Neshich G; Cai W; Shao X; Beautrait A; Maigret B
J Mol Model; 2006 Sep; 12(6):965-72. PubMed ID: 16673083
[TBL] [Abstract][Full Text] [Related]
17. Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.
Meyer M; Wilson P; Schomburg D
J Mol Biol; 1996 Nov; 264(1):199-210. PubMed ID: 8950278
[TBL] [Abstract][Full Text] [Related]
18. Examination of shape complementarity in docking of unbound proteins.
Norel R; Petrey D; Wolfson HJ; Nussinov R
Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824
[TBL] [Abstract][Full Text] [Related]
19. Protein Alpha Shape (PAS) Dock: a new gaussian-based score function suitable for docking in homology modelled protein structures.
Tøndel K; Anderssen E; Drabløs F
J Comput Aided Mol Des; 2006 Mar; 20(3):131-44. PubMed ID: 16652207
[TBL] [Abstract][Full Text] [Related]
20. Flexible ligand docking: a multistep strategy approach.
Wang J; Kollman PA; Kuntz ID
Proteins; 1999 Jul; 36(1):1-19. PubMed ID: 10373002
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]