These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

132 related articles for article (PubMed ID: 19885871)

  • 1. Exploring hierarchical refinement techniques for induced fit docking with protein and ligand flexibility.
    Borrelli KW; Cossins B; Guallar V
    J Comput Chem; 2010 Apr; 31(6):1224-35. PubMed ID: 19885871
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fully automated molecular mechanics based induced fit protein-ligand docking method.
    Koska J; Spassov VZ; Maynard AJ; Yan L; Austin N; Flook PK; Venkatachalam CM
    J Chem Inf Model; 2008 Oct; 48(10):1965-73. PubMed ID: 18816046
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Protein flexibility in ligand docking and virtual screening to protein kinases.
    Cavasotto CN; Abagyan RA
    J Mol Biol; 2004 Mar; 337(1):209-25. PubMed ID: 15001363
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
    Jackson RM; Gabb HA; Sternberg MJ
    J Mol Biol; 1998 Feb; 276(1):265-85. PubMed ID: 9514726
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Implicit flexibility in protein docking: cross-docking and local refinement.
    Król M; Chaleil RA; Tournier AL; Bates PA
    Proteins; 2007 Dec; 69(4):750-7. PubMed ID: 17671977
    [TBL] [Abstract][Full Text] [Related]  

  • 7. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H; Buning C; Rarey M; Lengauer T
    J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Novel procedure for modeling ligand/receptor induced fit effects.
    Sherman W; Day T; Jacobson MP; Friesner RA; Farid R
    J Med Chem; 2006 Jan; 49(2):534-53. PubMed ID: 16420040
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A QXP-based multistep docking procedure for accurate prediction of protein-ligand complexes.
    Alisaraie L; Haller LA; Fels G
    J Chem Inf Model; 2006; 46(3):1174-87. PubMed ID: 16711737
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility.
    Antes I
    Proteins; 2010 Apr; 78(5):1084-104. PubMed ID: 20017216
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SODOCK: swarm optimization for highly flexible protein-ligand docking.
    Chen HM; Liu BF; Huang HL; Hwang SF; Ho SY
    J Comput Chem; 2007 Jan; 28(2):612-23. PubMed ID: 17186483
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A flexible approach to induced fit docking.
    Nabuurs SB; Wagener M; de Vlieg J
    J Med Chem; 2007 Dec; 50(26):6507-18. PubMed ID: 18031000
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Effective handling of induced-fit motion in flexible docking.
    Mizutani MY; Takamatsu Y; Ichinose T; Nakamura K; Itai A
    Proteins; 2006 Jun; 63(4):878-91. PubMed ID: 16532451
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Modeling and selection of flexible proteins for structure-based drug design: backbone and side chain movements in p38 MAPK.
    Subramanian J; Sharma S; B-Rao C
    ChemMedChem; 2008 Feb; 3(2):336-44. PubMed ID: 18081134
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential.
    Liu Z; Dominy BN; Shakhnovich EI
    J Am Chem Soc; 2004 Jul; 126(27):8515-28. PubMed ID: 15238009
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RosettaLigand docking with full ligand and receptor flexibility.
    Davis IW; Baker D
    J Mol Biol; 2009 Jan; 385(2):381-92. PubMed ID: 19041878
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes.
    Bordner AJ; Abagyan R
    Proteins; 2006 May; 63(3):512-26. PubMed ID: 16470819
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY; Zou X
    Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Conformational selection of protein kinase A revealed by flexible-ligand flexible-protein docking.
    Huang Z; Wong CF
    J Comput Chem; 2009 Mar; 30(4):631-44. PubMed ID: 18711718
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RosettaDock in CAPRI rounds 6-12.
    Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D
    Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.