BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

402 related articles for article (PubMed ID: 1988954)

  • 1. Molecular dynamics simulation of the hydration shell of a B-DNA decamer reveals two main types of minor-groove hydration depending on groove width.
    Chuprina VP; Heinemann U; Nurislamov AA; Zielenkiewicz P; Dickerson RE; Saenger W
    Proc Natl Acad Sci U S A; 1991 Jan; 88(2):593-7. PubMed ID: 1988954
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Dependence of the hydration shell structure in the minor groove of the DNA double helix on the groove width as revealed by Monte Carlo simulation.
    Teplukhin AV; Poltev VI; Chuprina VP
    Biopolymers; 1991 Oct; 31(12):1445-53. PubMed ID: 1816879
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
    Privé GG; Yanagi K; Dickerson RE
    J Mol Biol; 1991 Jan; 217(1):177-99. PubMed ID: 1988677
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structure of the hydration shells of oligo(dA-dT).oligo(dA-dT) and oligo(dA).oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations.
    Eisenhaber F; Tumanyan VG; Abagyan RA
    Biopolymers; 1990; 30(5-6):563-81. PubMed ID: 2265229
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet.
    Ban C; Ramakrishnan B; Sundaralingam M
    J Mol Biol; 1994 Feb; 236(1):275-85. PubMed ID: 7508984
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Helix geometry, hydration, and G.A mismatch in a B-DNA decamer.
    Privé GG; Heinemann U; Chandrasegaran S; Kan LS; Kopka ML; Dickerson RE
    Science; 1987 Oct; 238(4826):498-504. PubMed ID: 3310237
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Molecular dynamics simulations of A. T-rich oligomers: sequence-specific binding of Na+ in the minor groove of B-DNA.
    Mocci F; Saba G
    Biopolymers; 2003 Apr; 68(4):471-85. PubMed ID: 12666173
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Molecular structure of the B-DNA dodecamer d(CGCAAATTTGCG)2. An examination of propeller twist and minor-groove water structure at 2.2 A resolution.
    Edwards KJ; Brown DG; Spink N; Skelly JV; Neidle S
    J Mol Biol; 1992 Aug; 226(4):1161-73. PubMed ID: 1518049
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements.
    Arai S; Chatake T; Ohhara T; Kurihara K; Tanaka I; Suzuki N; Fujimoto Z; Mizuno H; Niimura N
    Nucleic Acids Res; 2005; 33(9):3017-24. PubMed ID: 15914673
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The B-DNA dodecamer at high resolution reveals a spine of water on sodium.
    Shui X; McFail-Isom L; Hu GG; Williams LD
    Biochemistry; 1998 Jun; 37(23):8341-55. PubMed ID: 9622486
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Structure of the DNA decamer d(GGCAATTGCG) contains both major- and minor-groove binding G.(G.C) base triplets.
    Nunn CM; Neidle S
    Acta Crystallogr D Biol Crystallogr; 1998 Jul; 54(Pt 4):577-83. PubMed ID: 9761852
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Anomalous structure and properties of poly (dA).poly(dT). Computer simulation of the polynucleotide structure with the spine of hydration in the minor groove.
    Chuprina VP
    Nucleic Acids Res; 1987 Jan; 15(1):293-311. PubMed ID: 3822805
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structure and hydration of BamHI DNA recognition site: a molecular dynamics investigation.
    Castrignanò T; Chillemi G; Desideri A
    Biophys J; 2000 Sep; 79(3):1263-72. PubMed ID: 10968990
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Solution structure of the calicheamicin gamma 1I-DNA complex.
    Kumar RA; Ikemoto N; Patel DJ
    J Mol Biol; 1997 Jan; 265(2):187-201. PubMed ID: 9020982
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
    Chiu TK; Kaczor-Grzeskowiak M; Dickerson RE
    J Mol Biol; 1999 Sep; 292(3):589-608. PubMed ID: 10497024
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Analysis of local helix geometry in three B-DNA decamers and eight dodecamers.
    Yanagi K; Privé GG; Dickerson RE
    J Mol Biol; 1991 Jan; 217(1):201-14. PubMed ID: 1988678
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Crystallographic study of one turn of G/C-rich B-DNA.
    Heinemann U; Alings C
    J Mol Biol; 1989 Nov; 210(2):369-81. PubMed ID: 2600970
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Minor groove binding of SN6999 to an alkylated DNA: molecular structure of d(CGC[e6G]AATTCGCG)-SN6999 complex.
    Gao YG; Sriram M; Denny WA; Wang AH
    Biochemistry; 1993 Sep; 32(37):9639-48. PubMed ID: 8373768
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Theoretical considerations on the "spine of hydration" in the minor groove of d(CGCGAATTCGCG).d(GCGCTTAAGCGC): Monte Carlo computer simulation.
    Subramanian PS; Ravishanker G; Beveridge DL
    Proc Natl Acad Sci U S A; 1988 Mar; 85(6):1836-40. PubMed ID: 3162310
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural insights into the effect of hydration and ions on A-tract DNA: a molecular dynamics study.
    Madhumalar A; Bansal M
    Biophys J; 2003 Sep; 85(3):1805-16. PubMed ID: 12944294
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.