These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

159 related articles for article (PubMed ID: 19894980)

  • 21. Ab initio folding of albumin binding domain from all-atom molecular dynamics simulation.
    Lei H; Duan Y
    J Phys Chem B; 2007 May; 111(19):5458-63. PubMed ID: 17458992
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Force field influences in beta-hairpin folding simulations.
    Lwin TZ; Luo R
    Protein Sci; 2006 Nov; 15(11):2642-55. PubMed ID: 17075138
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Molecular dynamics study of peptides in implicit water: ab initio folding of beta-hairpin, beta-sheet, and beta beta alpha-motif.
    Jang S; Shin S; Pak Y
    J Am Chem Soc; 2002 May; 124(18):4976-7. PubMed ID: 11982359
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Folding thermodynamics of β-hairpins studied by replica-exchange molecular dynamics simulations.
    Zerze GH; Uz B; Mittal J
    Proteins; 2015 Jul; 83(7):1307-15. PubMed ID: 25973961
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Computer simulations of protein folding by targeted molecular dynamics.
    Ferrara P; Apostolakis J; Caflisch A
    Proteins; 2000 May; 39(3):252-60. PubMed ID: 10737947
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Folding Simulations of an α-Helical Hairpin Motif αtα with Residue-Specific Force Fields.
    Zeng J; Jiang F; Wu YD
    J Phys Chem B; 2016 Jan; 120(1):33-41. PubMed ID: 26673753
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
    Zhou R
    Proteins; 2003 Nov; 53(2):148-61. PubMed ID: 14517967
    [TBL] [Abstract][Full Text] [Related]  

  • 28. All-atom ab initio folding of a diverse set of proteins.
    Yang JS; Chen WW; Skolnick J; Shakhnovich EI
    Structure; 2007 Jan; 15(1):53-63. PubMed ID: 17223532
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Insights into the folding pathway of the Engrailed Homeodomain protein using replica exchange molecular dynamics simulations.
    Koulgi S; Sonavane U; Joshi R
    J Mol Graph Model; 2010 Nov; 29(3):481-91. PubMed ID: 21035367
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forces.
    Wen EZ; Hsieh MJ; Kollman PA; Luo R
    J Mol Graph Model; 2004 May; 22(5):415-24. PubMed ID: 15099837
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains.
    Liwo A; Khalili M; Scheraga HA
    Proc Natl Acad Sci U S A; 2005 Feb; 102(7):2362-7. PubMed ID: 15677316
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Transformation of a design peptide between the α-helix and β-hairpin structures using a helix-strand replica-exchange molecular dynamics simulation.
    Okumura H; Itoh SG
    Phys Chem Chem Phys; 2013 Sep; 15(33):13852-61. PubMed ID: 23839056
    [TBL] [Abstract][Full Text] [Related]  

  • 33. All-atom ab initio native structure prediction of a mixed fold (1FME): a comparison of structural and folding characteristics of various beta beta alpha miniproteins.
    Kim E; Jang S; Pak Y
    J Chem Phys; 2009 Nov; 131(19):195102. PubMed ID: 19929079
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Ab initio folding of extended α-helix: a theoretical study about the role of electrostatic polarization in the folding of helical structures.
    Lazim R; Wei C; Sun T; Zhang D
    Proteins; 2013 Sep; 81(9):1610-20. PubMed ID: 23670702
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Ab initio protein folding simulations using atomic burials as informational intermediates between sequence and structure.
    van der Linden MG; Ferreira DC; de Oliveira LC; Onuchic JN; de Araújo AF
    Proteins; 2014 Jul; 82(7):1186-99. PubMed ID: 24356941
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Molecular dynamics with the united-residue model of polypeptide chains. II. Langevin and Berendsen-bath dynamics and tests on model alpha-helical systems.
    Khalili M; Liwo A; Jagielska A; Scheraga HA
    J Phys Chem B; 2005 Jul; 109(28):13798-810. PubMed ID: 16852728
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T; Sugita Y; Okamoto Y
    Proteins; 2007 Mar; 66(4):846-59. PubMed ID: 17173285
    [TBL] [Abstract][Full Text] [Related]  

  • 38. On the origins of the weak folding cooperativity of a designed ββα ultrafast protein FSD-1.
    Wu C; Shea JE
    PLoS Comput Biol; 2010 Nov; 6(11):e1000998. PubMed ID: 21124953
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and tests of the optimization method with single training proteins.
    Liwo A; Khalili M; Czaplewski C; Kalinowski S; Ołdziej S; Wachucik K; Scheraga HA
    J Phys Chem B; 2007 Jan; 111(1):260-85. PubMed ID: 17201450
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study.
    Nguyen PH; Stock G; Mittag E; Hu CK; Li MS
    Proteins; 2005 Dec; 61(4):795-808. PubMed ID: 16240446
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.