BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 19902909)

  • 1. Proteins fold by subdiffusion of the order parameter.
    Sangha AK; Keyes T
    J Phys Chem B; 2009 Dec; 113(48):15886-94. PubMed ID: 19902909
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Thermodynamics and folding pathways of trpzip2: an accelerated molecular dynamics simulation study.
    Yang L; Shao Q; Gao YQ
    J Phys Chem B; 2009 Jan; 113(3):803-8. PubMed ID: 19113829
    [TBL] [Abstract][Full Text] [Related]  

  • 3. New force replica exchange method and protein folding pathways probed by force-clamp technique.
    Kouza M; Hu CK; Li MS
    J Chem Phys; 2008 Jan; 128(4):045103. PubMed ID: 18248010
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Coordinate and time-dependent diffusion dynamics in protein folding.
    Oliveira RJ; Whitford PC; Chahine J; Leite VB; Wang J
    Methods; 2010 Sep; 52(1):91-8. PubMed ID: 20438841
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Effective stochastic dynamics on a protein folding energy landscape.
    Yang S; Onuchic JN; Levine H
    J Chem Phys; 2006 Aug; 125(5):054910. PubMed ID: 16942260
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Theoretical characterization of alpha-helix and beta-hairpin folding kinetics.
    Daidone I; D'Abramo M; Di Nola A; Amadei A
    J Am Chem Soc; 2005 Oct; 127(42):14825-32. PubMed ID: 16231936
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Hierarchy of folding and unfolding events of protein G, CI2, and ACBP from explicit-solvent simulations.
    Camilloni C; Broglia RA; Tiana G
    J Chem Phys; 2011 Jan; 134(4):045105. PubMed ID: 21280806
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Computer simulations and theory of protein translocation.
    Makarov DE
    Acc Chem Res; 2009 Feb; 42(2):281-9. PubMed ID: 19072704
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Transition states for folding of circular-permuted proteins.
    Chen J; Wang J; Wang W
    Proteins; 2004 Oct; 57(1):153-71. PubMed ID: 15326601
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Influence of Go-like interactions on global shapes of energy landscapes in beta-barrel forming model proteins: inherent structure analysis and statistical temperature molecular dynamics simulation.
    Kim J; Keyes T
    J Phys Chem B; 2008 Jan; 112(3):954-66. PubMed ID: 18088107
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Application of the diffusion-collision model to the folding of three-helix bundle proteins.
    Islam SA; Karplus M; Weaver DL
    J Mol Biol; 2002 Apr; 318(1):199-215. PubMed ID: 12054779
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reproducible polypeptide folding and structure prediction using molecular dynamics simulations.
    Seibert MM; Patriksson A; Hess B; van der Spoel D
    J Mol Biol; 2005 Nov; 354(1):173-83. PubMed ID: 16236315
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Direct folding simulation of alpha-helices and beta-hairpins based on a single all-atom force field with an implicit solvation model.
    Jang S; Kim E; Pak Y
    Proteins; 2007 Jan; 66(1):53-60. PubMed ID: 17063490
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation.
    Shimada J; Kussell EL; Shakhnovich EI
    J Mol Biol; 2001 Apr; 308(1):79-95. PubMed ID: 11302709
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding.
    Oliveberg M; Tan YJ; Silow M; Fersht AR
    J Mol Biol; 1998 Apr; 277(4):933-43. PubMed ID: 9545382
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Rapid boundary element solvation electrostatics calculations in folding simulations: successful folding of a 23-residue peptide.
    Totrov M; Abagyan R
    Biopolymers; 2001; 60(2):124-33. PubMed ID: 11455546
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improved theoretical description of protein folding kinetics from rotations in the phase space of relevant order parameters.
    Baumketner A; Shea JE; Hiwatari Y
    J Chem Phys; 2004 Jul; 121(2):1114-20. PubMed ID: 15260647
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Folding of small proteins using a single continuous potential.
    Kim SY; Lee J; Lee J
    J Chem Phys; 2004 May; 120(17):8271-6. PubMed ID: 15267747
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparative study of generalized born models: Born radii and peptide folding.
    Zhu J; Alexov E; Honig B
    J Phys Chem B; 2005 Feb; 109(7):3008-22. PubMed ID: 16851315
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin.
    Kolinski A; Skolnick J
    Proteins; 1994 Apr; 18(4):353-66. PubMed ID: 8208727
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.