150 related articles for article (PubMed ID: 19908365)
21. An efficient algorithm for pairwise local alignment of protein interaction networks.
Chen W; Schmidt M; Tian W; Samatova NF; Zhang S
J Bioinform Comput Biol; 2015 Apr; 13(2):1550003. PubMed ID: 25477149
[TBL] [Abstract][Full Text] [Related]
22. Topological network alignment uncovers biological function and phylogeny.
Kuchaiev O; Milenkovic T; Memisevic V; Hayes W; Przulj N
J R Soc Interface; 2010 Sep; 7(50):1341-54. PubMed ID: 20236959
[TBL] [Abstract][Full Text] [Related]
23. Disorder and sequence repeats in hub proteins and their implications for network evolution.
Dosztányi Z; Chen J; Dunker AK; Simon I; Tompa P
J Proteome Res; 2006 Nov; 5(11):2985-95. PubMed ID: 17081050
[TBL] [Abstract][Full Text] [Related]
24. Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes.
Haynes C; Oldfield CJ; Ji F; Klitgord N; Cusick ME; Radivojac P; Uversky VN; Vidal M; Iakoucheva LM
PLoS Comput Biol; 2006 Aug; 2(8):e100. PubMed ID: 16884331
[TBL] [Abstract][Full Text] [Related]
25. Twadn: an efficient alignment algorithm based on time warping for pairwise dynamic networks.
Zhong Y; Li J; He J; Gao Y; Liu J; Wang J; Shang X; Hu J
BMC Bioinformatics; 2020 Sep; 21(Suppl 13):385. PubMed ID: 32938373
[TBL] [Abstract][Full Text] [Related]
26. Function-dependent clustering of orthologues and paralogues of cyclophilins.
Galat A
Proteins; 2004 Sep; 56(4):808-20. PubMed ID: 15281132
[TBL] [Abstract][Full Text] [Related]
27. HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks.
Hashemifar S; Xu J
Bioinformatics; 2014 Sep; 30(17):i438-44. PubMed ID: 25161231
[TBL] [Abstract][Full Text] [Related]
28. SPINAL: scalable protein interaction network alignment.
Aladag AE; Erten C
Bioinformatics; 2013 Apr; 29(7):917-24. PubMed ID: 23413436
[TBL] [Abstract][Full Text] [Related]
29. Computational analyses of TBC protein family in eukaryotes.
Gao X; Jin C; Xue Y; Yao X
Protein Pept Lett; 2008; 15(5):505-9. PubMed ID: 18537741
[TBL] [Abstract][Full Text] [Related]
30. IsoBase: a database of functionally related proteins across PPI networks.
Park D; Singh R; Baym M; Liao CS; Berger B
Nucleic Acids Res; 2011 Jan; 39(Database issue):D295-300. PubMed ID: 21177658
[TBL] [Abstract][Full Text] [Related]
31. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
Alkan F; Erten C
Bioinformatics; 2015 Jul; 31(14):2356-63. PubMed ID: 25788620
[TBL] [Abstract][Full Text] [Related]
32. Analysis of septins across kingdoms reveals orthology and new motifs.
Pan F; Malmberg RL; Momany M
BMC Evol Biol; 2007 Jul; 7():103. PubMed ID: 17601340
[TBL] [Abstract][Full Text] [Related]
33. Evolution of the Rab family of small GTP-binding proteins.
Pereira-Leal JB; Seabra MC
J Mol Biol; 2001 Nov; 313(4):889-901. PubMed ID: 11697911
[TBL] [Abstract][Full Text] [Related]
34. Finding alignments of conserved graphlets in protein interaction networks.
Hsieh MF; Sze SH
J Comput Biol; 2014 Mar; 21(3):234-46. PubMed ID: 24506222
[TBL] [Abstract][Full Text] [Related]
35. A Global Network Alignment Method Using Discrete Particle Swarm Optimization.
Huang J; Gong M; Ma L
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):705-718. PubMed ID: 27775534
[TBL] [Abstract][Full Text] [Related]
36. PrimAlign: PageRank-inspired Markovian alignment for large biological networks.
Kalecky K; Cho YR
Bioinformatics; 2018 Jul; 34(13):i537-i546. PubMed ID: 29949962
[TBL] [Abstract][Full Text] [Related]
37. Lethality and entropy of protein interaction networks.
Manke T; Demetrius L; Vingron M
Genome Inform; 2005; 16(1):159-63. PubMed ID: 16362918
[TBL] [Abstract][Full Text] [Related]
38. Systematic functional assessment of human protein-protein interaction maps.
Chaurasia G; Herzel H; Wanker EE; Futschik ME
Genome Inform; 2006; 17(1):36-45. PubMed ID: 17503354
[TBL] [Abstract][Full Text] [Related]
39. Benchmarking tools for the alignment of functional noncoding DNA.
Pollard DA; Bergman CM; Stoye J; Celniker SE; Eisen MB
BMC Bioinformatics; 2004 Jan; 5():6. PubMed ID: 14736341
[TBL] [Abstract][Full Text] [Related]
40. A protein-protein interaction network aligner study in the multi-objective domain.
Menor-Flores M; Vega-Rodríguez MA
Comput Methods Programs Biomed; 2024 Jun; 250():108188. PubMed ID: 38657382
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]