BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

440 related articles for article (PubMed ID: 19916561)

  • 21. False Discovery Rate Estimation for Hybrid Mass Spectral Library Search Identifications in Bottom-up Proteomics.
    Burke MC; Zhang Z; Mirokhin YA; Tchekovskoi DV; Liang Y; Stein SE
    J Proteome Res; 2019 Sep; 18(9):3223-3234. PubMed ID: 31364354
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.
    Frewen BE; Merrihew GE; Wu CC; Noble WS; MacCoss MJ
    Anal Chem; 2006 Aug; 78(16):5678-84. PubMed ID: 16906711
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Denoising peptide tandem mass spectra for spectral libraries: a Bayesian approach.
    Shao W; Lam H
    J Proteome Res; 2013 Jul; 12(7):3223-32. PubMed ID: 23675732
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.
    Leinenbach A; Hartmer R; Lubeck M; Kneissl B; Elnakady YA; Baessmann C; Müller R; Huber CG
    J Proteome Res; 2009 Sep; 8(9):4350-61. PubMed ID: 19634914
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A refined method to calculate false discovery rates for peptide identification using decoy databases.
    Navarro P; Vázquez J
    J Proteome Res; 2009 Apr; 8(4):1792-6. PubMed ID: 19714873
    [TBL] [Abstract][Full Text] [Related]  

  • 26. De novo sequencing methods in proteomics.
    Hughes C; Ma B; Lajoie GA
    Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Oscore: a combined score to reduce false negative rates for peptide identification in tandem mass spectrometry analysis.
    Shao C; Sun W; Li F; Yang R; Zhang L; Gao Y
    J Mass Spectrom; 2009 Jan; 44(1):25-31. PubMed ID: 18698557
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
    Waridel P; Frank A; Thomas H; Surendranath V; Sunyaev S; Pevzner P; Shevchenko A
    Proteomics; 2007 Jul; 7(14):2318-29. PubMed ID: 17623296
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines.
    Yu W; Taylor JA; Davis MT; Bonilla LE; Lee KA; Auger PL; Farnsworth CC; Welcher AA; Patterson SD
    Proteomics; 2010 Mar; 10(6):1172-89. PubMed ID: 20101609
    [TBL] [Abstract][Full Text] [Related]  

  • 30. [A novel approach for peptide identification by tandem mass spectrometry].
    Sheng QH; Tang HX; Xie T; Wang LS; Ding DF
    Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai); 2003 Aug; 35(8):734-40. PubMed ID: 12897969
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Assigning significance to peptides identified by tandem mass spectrometry using decoy databases.
    Käll L; Storey JD; MacCoss MJ; Noble WS
    J Proteome Res; 2008 Jan; 7(1):29-34. PubMed ID: 18067246
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing.
    Li Y; Chi H; Wang LH; Wang HP; Fu Y; Yuan ZF; Li SJ; Liu YS; Sun RX; Zeng R; He SM
    Rapid Commun Mass Spectrom; 2010 Mar; 24(6):807-14. PubMed ID: 20187083
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Spectral library searching in proteomics.
    Griss J
    Proteomics; 2016 Mar; 16(5):729-40. PubMed ID: 26616598
    [TBL] [Abstract][Full Text] [Related]  

  • 34. QuickMod: A tool for open modification spectrum library searches.
    Ahrné E; Nikitin F; Lisacek F; Müller M
    J Proteome Res; 2011 Jul; 10(7):2913-21. PubMed ID: 21500769
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Estimating the confidence of peptide identifications without decoy databases.
    Renard BY; Timm W; Kirchner M; Steen JA; Hamprecht FA; Steen H
    Anal Chem; 2010 Jun; 82(11):4314-8. PubMed ID: 20455556
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A simple workflow to increase MS2 identification rate by subsequent spectral library search.
    Ahrné E; Masselot A; Binz PA; Müller M; Lisacek F
    Proteomics; 2009 Mar; 9(6):1731-6. PubMed ID: 19235171
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies.
    Feng J; Naiman DQ; Cooper B
    Bioinformatics; 2007 Sep; 23(17):2210-7. PubMed ID: 17510167
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Impact of ion trap tandem mass spectra variability on the identification of peptides.
    Venable JD; Yates JR
    Anal Chem; 2004 May; 76(10):2928-37. PubMed ID: 15144207
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.
    Elias JE; Haas W; Faherty BK; Gygi SP
    Nat Methods; 2005 Sep; 2(9):667-75. PubMed ID: 16118637
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Computational approaches to peptide identification via tandem MS.
    Hubbard SJ
    Methods Mol Biol; 2010; 604():23-42. PubMed ID: 20013362
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 22.