440 related articles for article (PubMed ID: 19916561)
21. False Discovery Rate Estimation for Hybrid Mass Spectral Library Search Identifications in Bottom-up Proteomics.
Burke MC; Zhang Z; Mirokhin YA; Tchekovskoi DV; Liang Y; Stein SE
J Proteome Res; 2019 Sep; 18(9):3223-3234. PubMed ID: 31364354
[TBL] [Abstract][Full Text] [Related]
22. Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.
Frewen BE; Merrihew GE; Wu CC; Noble WS; MacCoss MJ
Anal Chem; 2006 Aug; 78(16):5678-84. PubMed ID: 16906711
[TBL] [Abstract][Full Text] [Related]
23. Denoising peptide tandem mass spectra for spectral libraries: a Bayesian approach.
Shao W; Lam H
J Proteome Res; 2013 Jul; 12(7):3223-32. PubMed ID: 23675732
[TBL] [Abstract][Full Text] [Related]
24. Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.
Leinenbach A; Hartmer R; Lubeck M; Kneissl B; Elnakady YA; Baessmann C; Müller R; Huber CG
J Proteome Res; 2009 Sep; 8(9):4350-61. PubMed ID: 19634914
[TBL] [Abstract][Full Text] [Related]
25. A refined method to calculate false discovery rates for peptide identification using decoy databases.
Navarro P; Vázquez J
J Proteome Res; 2009 Apr; 8(4):1792-6. PubMed ID: 19714873
[TBL] [Abstract][Full Text] [Related]
26. De novo sequencing methods in proteomics.
Hughes C; Ma B; Lajoie GA
Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
[TBL] [Abstract][Full Text] [Related]
27. Oscore: a combined score to reduce false negative rates for peptide identification in tandem mass spectrometry analysis.
Shao C; Sun W; Li F; Yang R; Zhang L; Gao Y
J Mass Spectrom; 2009 Jan; 44(1):25-31. PubMed ID: 18698557
[TBL] [Abstract][Full Text] [Related]
28. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
Waridel P; Frank A; Thomas H; Surendranath V; Sunyaev S; Pevzner P; Shevchenko A
Proteomics; 2007 Jul; 7(14):2318-29. PubMed ID: 17623296
[TBL] [Abstract][Full Text] [Related]
29. Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines.
Yu W; Taylor JA; Davis MT; Bonilla LE; Lee KA; Auger PL; Farnsworth CC; Welcher AA; Patterson SD
Proteomics; 2010 Mar; 10(6):1172-89. PubMed ID: 20101609
[TBL] [Abstract][Full Text] [Related]
30. [A novel approach for peptide identification by tandem mass spectrometry].
Sheng QH; Tang HX; Xie T; Wang LS; Ding DF
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai); 2003 Aug; 35(8):734-40. PubMed ID: 12897969
[TBL] [Abstract][Full Text] [Related]
31. Assigning significance to peptides identified by tandem mass spectrometry using decoy databases.
Käll L; Storey JD; MacCoss MJ; Noble WS
J Proteome Res; 2008 Jan; 7(1):29-34. PubMed ID: 18067246
[TBL] [Abstract][Full Text] [Related]
32. Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing.
Li Y; Chi H; Wang LH; Wang HP; Fu Y; Yuan ZF; Li SJ; Liu YS; Sun RX; Zeng R; He SM
Rapid Commun Mass Spectrom; 2010 Mar; 24(6):807-14. PubMed ID: 20187083
[TBL] [Abstract][Full Text] [Related]
33. Spectral library searching in proteomics.
Griss J
Proteomics; 2016 Mar; 16(5):729-40. PubMed ID: 26616598
[TBL] [Abstract][Full Text] [Related]
34. QuickMod: A tool for open modification spectrum library searches.
Ahrné E; Nikitin F; Lisacek F; Müller M
J Proteome Res; 2011 Jul; 10(7):2913-21. PubMed ID: 21500769
[TBL] [Abstract][Full Text] [Related]
35. Estimating the confidence of peptide identifications without decoy databases.
Renard BY; Timm W; Kirchner M; Steen JA; Hamprecht FA; Steen H
Anal Chem; 2010 Jun; 82(11):4314-8. PubMed ID: 20455556
[TBL] [Abstract][Full Text] [Related]
36. A simple workflow to increase MS2 identification rate by subsequent spectral library search.
Ahrné E; Masselot A; Binz PA; Müller M; Lisacek F
Proteomics; 2009 Mar; 9(6):1731-6. PubMed ID: 19235171
[TBL] [Abstract][Full Text] [Related]
37. Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies.
Feng J; Naiman DQ; Cooper B
Bioinformatics; 2007 Sep; 23(17):2210-7. PubMed ID: 17510167
[TBL] [Abstract][Full Text] [Related]
38. Impact of ion trap tandem mass spectra variability on the identification of peptides.
Venable JD; Yates JR
Anal Chem; 2004 May; 76(10):2928-37. PubMed ID: 15144207
[TBL] [Abstract][Full Text] [Related]
39. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.
Elias JE; Haas W; Faherty BK; Gygi SP
Nat Methods; 2005 Sep; 2(9):667-75. PubMed ID: 16118637
[TBL] [Abstract][Full Text] [Related]
40. Computational approaches to peptide identification via tandem MS.
Hubbard SJ
Methods Mol Biol; 2010; 604():23-42. PubMed ID: 20013362
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]