BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

438 related articles for article (PubMed ID: 19916561)

  • 41. Improving peptide identification using an empirical peptide retention time database.
    Sun W; Zhang L; Yang R; Shao C; Zhang Z; Gao Y
    Rapid Commun Mass Spectrom; 2009 Jan; 23(1):109-18. PubMed ID: 19065623
    [TBL] [Abstract][Full Text] [Related]  

  • 42. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 43. BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics.
    Sheng Q; Dai J; Wu Y; Tang H; Zeng R
    J Proteome Res; 2012 Mar; 11(3):1494-502. PubMed ID: 22217156
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Estimating false discovery rates for peptide and protein identification using randomized databases.
    Hather G; Higdon R; Bauman A; von Haller PD; Kolker E
    Proteomics; 2010 Jun; 10(12):2369-76. PubMed ID: 20391536
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Common Decoy Distributions Simplify False Discovery Rate Estimation in Shotgun Proteomics.
    Madej D; Wu L; Lam H
    J Proteome Res; 2022 Feb; 21(2):339-348. PubMed ID: 34989576
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Instance based algorithm for posterior probability calculation by target-decoy strategy to improve protein identifications.
    Jiang X; Dong X; Ye M; Zou H
    Anal Chem; 2008 Dec; 80(23):9326-35. PubMed ID: 19551949
    [TBL] [Abstract][Full Text] [Related]  

  • 47. XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
    Muth T; Vaudel M; Barsnes H; Martens L; Sickmann A
    Proteomics; 2010 Apr; 10(7):1522-4. PubMed ID: 20140905
    [TBL] [Abstract][Full Text] [Related]  

  • 48. The Hybrid Search: A Mass Spectral Library Search Method for Discovery of Modifications in Proteomics.
    Burke MC; Mirokhin YA; Tchekhovskoi DV; Markey SP; Heidbrink Thompson J; Larkin C; Stein SE
    J Proteome Res; 2017 May; 16(5):1924-1935. PubMed ID: 28367633
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Partially sequenced organisms, decoy searches and false discovery rates.
    Victor B; Gabriël S; Kanobana K; Mostovenko E; Polman K; Dorny P; Deelder AM; Palmblad M
    J Proteome Res; 2012 Mar; 11(3):1991-5. PubMed ID: 22339108
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.
    Heller M; Ye M; Michel PE; Morier P; Stalder D; Jünger MA; Aebersold R; Reymond F; Rossier JS
    J Proteome Res; 2005; 4(6):2273-82. PubMed ID: 16335976
    [TBL] [Abstract][Full Text] [Related]  

  • 51. A spectral clustering approach to MS/MS identification of post-translational modifications.
    Falkner JA; Falkner JW; Yocum AK; Andrews PC
    J Proteome Res; 2008 Nov; 7(11):4614-22. PubMed ID: 18800783
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Deconvolution of mixture spectra and increased throughput of peptide identification by utilization of intensified complementary ions formed in tandem mass spectrometry.
    Kryuchkov F; Verano-Braga T; Hansen TA; Sprenger RR; Kjeldsen F
    J Proteome Res; 2013 Jul; 12(7):3362-71. PubMed ID: 23725413
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Repeat-Preserving Decoy Database for False Discovery Rate Estimation in Peptide Identification.
    Moosa JM; Guan S; Moran MF; Ma B
    J Proteome Res; 2020 Mar; 19(3):1029-1036. PubMed ID: 32009416
    [TBL] [Abstract][Full Text] [Related]  

  • 54. The use of proteotypic peptide libraries for protein identification.
    Craig R; Cortens JP; Beavis RC
    Rapid Commun Mass Spectrom; 2005; 19(13):1844-50. PubMed ID: 15945033
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Proteomics-grade de novo sequencing approach.
    Savitski MM; Nielsen ML; Kjeldsen F; Zubarev RA
    J Proteome Res; 2005; 4(6):2348-54. PubMed ID: 16335984
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Support vector machines for improved peptide identification from tandem mass spectrometry database search.
    Webb-Robertson BJ
    Methods Mol Biol; 2009; 492():453-60. PubMed ID: 19241051
    [TBL] [Abstract][Full Text] [Related]  

  • 57. A Fast and Memory-Efficient Spectral Library Search Algorithm Using Locality-Sensitive Hashing.
    Wang L; Liu K; Li S; Tang H
    Proteomics; 2020 Nov; 20(21-22):e2000002. PubMed ID: 32415809
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book.
    Sadygov RG; Cociorva D; Yates JR
    Nat Methods; 2004 Dec; 1(3):195-202. PubMed ID: 15789030
    [TBL] [Abstract][Full Text] [Related]  

  • 59. MassWiz: a novel scoring algorithm with target-decoy based analysis pipeline for tandem mass spectrometry.
    Yadav AK; Kumar D; Dash D
    J Proteome Res; 2011 May; 10(5):2154-60. PubMed ID: 21417338
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Efficient reduction of candidate matches in peptide spectrum library searching using the top k most intense peaks.
    Vu TN; Bittremieux W; Valkenborg D; Goethals B; Lemière F; Laukens K
    J Proteome Res; 2014 Sep; 13(9):4175-83. PubMed ID: 25004400
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 22.