217 related articles for article (PubMed ID: 19919102)
1. Common folding mechanism of a beta-hairpin peptide via non-native turn formation revealed by unbiased molecular dynamics simulations.
Thukral L; Smith JC; Daidone I
J Am Chem Soc; 2009 Dec; 131(50):18147-52. PubMed ID: 19919102
[TBL] [Abstract][Full Text] [Related]
2. Folding dynamics of 10-residue beta-hairpin peptide chignolin.
Suenaga A; Narumi T; Futatsugi N; Yanai R; Ohno Y; Okimoto N; Taiji M
Chem Asian J; 2007 May; 2(5):591-8. PubMed ID: 17465405
[TBL] [Abstract][Full Text] [Related]
3. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
Yoda T; Sugita Y; Okamoto Y
Proteins; 2007 Mar; 66(4):846-59. PubMed ID: 17173285
[TBL] [Abstract][Full Text] [Related]
4. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.
Griffiths-Jones SR; Maynard AJ; Searle MS
J Mol Biol; 1999 Oct; 292(5):1051-69. PubMed ID: 10512702
[TBL] [Abstract][Full Text] [Related]
5. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
Patel S; Sasidhar YU
J Pept Sci; 2007 Oct; 13(10):679-92. PubMed ID: 17787022
[TBL] [Abstract][Full Text] [Related]
6. Beta-hairpin folding by a model amyloid peptide in solution and at an interface.
Knecht V
J Phys Chem B; 2008 Aug; 112(31):9476-83. PubMed ID: 18593146
[TBL] [Abstract][Full Text] [Related]
7. Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.
Ma B; Nussinov R
J Mol Biol; 2000 Mar; 296(4):1091-104. PubMed ID: 10686106
[TBL] [Abstract][Full Text] [Related]
8. Folding simulations of a three-stranded antiparallel beta -sheet peptide.
Ferrara P; Caflisch A
Proc Natl Acad Sci U S A; 2000 Sep; 97(20):10780-5. PubMed ID: 10984515
[TBL] [Abstract][Full Text] [Related]
9. beta-hairpin folding and stability: molecular dynamics simulations of designed peptides in aqueous solution.
Santiveri CM; Jiménez MA; Rico M; Van Gunsteren WF; Daura X
J Pept Sci; 2004 Sep; 10(9):546-65. PubMed ID: 15473263
[TBL] [Abstract][Full Text] [Related]
10. Reproducible polypeptide folding and structure prediction using molecular dynamics simulations.
Seibert MM; Patriksson A; Hess B; van der Spoel D
J Mol Biol; 2005 Nov; 354(1):173-83. PubMed ID: 16236315
[TBL] [Abstract][Full Text] [Related]
11. Effects of turn residues on beta-hairpin folding--a molecular dynamics study.
Wang H; Sung SS
Biopolymers; 1999 Dec; 50(7):763-76. PubMed ID: 10547531
[TBL] [Abstract][Full Text] [Related]
12. Molecular dynamics simulations of folding processes of a beta-hairpin in an implicit solvent.
Chen C; Xiao Y
Phys Biol; 2006 Aug; 3(3):161-71. PubMed ID: 17021380
[TBL] [Abstract][Full Text] [Related]
13. Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.
Cao Z; Liu L; Wu P; Wang J
Acta Biochim Biophys Sin (Shanghai); 2011 Mar; 43(3):172-80. PubMed ID: 21289072
[TBL] [Abstract][Full Text] [Related]
14. Native topology or specific interactions: what is more important for protein folding?
Ferrara P; Caflisch A
J Mol Biol; 2001 Mar; 306(4):837-50. PubMed ID: 11243792
[TBL] [Abstract][Full Text] [Related]
15. Absence of reptation in the high-temperature folding of the trpzip2 beta-hairpin peptide.
Pitera JW; Haque I; Swope WC
J Chem Phys; 2006 Apr; 124(14):141102. PubMed ID: 16626172
[TBL] [Abstract][Full Text] [Related]
16. Beta-hairpin conformation of fibrillogenic peptides: structure and alpha-beta transition mechanism revealed by molecular dynamics simulations.
Daidone I; Simona F; Roccatano D; Broglia RA; Tiana G; Colombo G; Di Nola A
Proteins; 2004 Oct; 57(1):198-204. PubMed ID: 15326604
[TBL] [Abstract][Full Text] [Related]
17. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
Mukherjee A; Bagchi B
J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
[TBL] [Abstract][Full Text] [Related]
18. Effects of a mutation on the folding mechanism of a beta-hairpin.
Juraszek J; Bolhuis PG
J Phys Chem B; 2009 Dec; 113(50):16184-96. PubMed ID: 19924848
[TBL] [Abstract][Full Text] [Related]
19. Thermodynamics and folding pathways of trpzip2: an accelerated molecular dynamics simulation study.
Yang L; Shao Q; Gao YQ
J Phys Chem B; 2009 Jan; 113(3):803-8. PubMed ID: 19113829
[TBL] [Abstract][Full Text] [Related]
20. Stability and folding kinetics of a ubiquitin mutant with a strong propensity for nonnative beta-hairpin conformation in the unfolded state.
Platt GW; Simpson SA; Layfield R; Searle MS
Biochemistry; 2003 Nov; 42(46):13762-71. PubMed ID: 14622023
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]