These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

230 related articles for article (PubMed ID: 19927325)

  • 1. MUFOLD: A new solution for protein 3D structure prediction.
    Zhang J; Wang Q; Barz B; He Z; Kosztin I; Shang Y; Xu D
    Proteins; 2010 Apr; 78(5):1137-52. PubMed ID: 19927325
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Prediction of protein tertiary structures using MUFOLD.
    Zhang J; He Z; Wang Q; Barz B; Kosztin I; Shang Y; Xu D
    Methods Mol Biol; 2012; 815():3-13. PubMed ID: 22130979
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Benchmarking of TASSER_2.0: an improved protein structure prediction algorithm with more accurate predicted contact restraints.
    Lee SY; Skolnick J
    Biophys J; 2008 Aug; 95(4):1956-64. PubMed ID: 18487301
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structure prediction for CASP8 with all-atom refinement using Rosetta.
    Raman S; Vernon R; Thompson J; Tyka M; Sadreyev R; Pei J; Kim D; Kellogg E; DiMaio F; Lange O; Kinch L; Sheffler W; Kim BH; Das R; Grishin NV; Baker D
    Proteins; 2009; 77 Suppl 9(0 9):89-99. PubMed ID: 19701941
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A multilayer evaluation approach for protein structure prediction and model quality assessment.
    Zhang J; Wang Q; Vantasin K; Zhang J; He Z; Kosztin I; Shang Y; Xu D
    Proteins; 2011; 79 Suppl 10(Suppl 10):172-84. PubMed ID: 21997706
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Tertiary structure predictions on a comprehensive benchmark of medium to large size proteins.
    Zhang Y; Skolnick J
    Biophys J; 2004 Oct; 87(4):2647-55. PubMed ID: 15454459
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA.
    Bystroff C; Shao Y
    Bioinformatics; 2002; 18 Suppl 1():S54-61. PubMed ID: 12169531
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
    Taly JF; Marin A; Gibrat JF
    BMC Bioinformatics; 2008 Jan; 9():6. PubMed ID: 18179702
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling.
    Meier A; Söding J
    PLoS Comput Biol; 2015 Oct; 11(10):e1004343. PubMed ID: 26496371
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Threading using neural nEtwork (TUNE): the measure of protein sequence-structure compatibility.
    Lin K; May AC; Taylor WR
    Bioinformatics; 2002 Oct; 18(10):1350-7. PubMed ID: 12376379
    [TBL] [Abstract][Full Text] [Related]  

  • 11. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
    Teichert F; Minning J; Bastolla U; Porto M
    BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Template-based and free modeling by RAPTOR++ in CASP8.
    Xu J; Peng J; Zhao F
    Proteins; 2009; 77 Suppl 9(Suppl 9):133-7. PubMed ID: 19722267
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Consensus alignment for reliable framework prediction in homology modeling.
    Prasad JC; Comeau SR; Vajda S; Camacho CJ
    Bioinformatics; 2003 Sep; 19(13):1682-91. PubMed ID: 12967965
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein structure prediction enhanced with evolutionary diversity: SPEED.
    DeBartolo J; Hocky G; Wilde M; Xu J; Freed KF; Sosnick TR
    Protein Sci; 2010 Mar; 19(3):520-34. PubMed ID: 20066664
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Tools for integrated sequence-structure analysis with UCSF Chimera.
    Meng EC; Pettersen EF; Couch GS; Huang CC; Ferrin TE
    BMC Bioinformatics; 2006 Jul; 7():339. PubMed ID: 16836757
    [TBL] [Abstract][Full Text] [Related]  

  • 16. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
    Zhang Y; Kolinski A; Skolnick J
    Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The protein structure prediction problem could be solved using the current PDB library.
    Zhang Y; Skolnick J
    Proc Natl Acad Sci U S A; 2005 Jan; 102(4):1029-34. PubMed ID: 15653774
    [TBL] [Abstract][Full Text] [Related]  

  • 18. 3D-Jury: a simple approach to improve protein structure predictions.
    Ginalski K; Elofsson A; Fischer D; Rychlewski L
    Bioinformatics; 2003 May; 19(8):1015-8. PubMed ID: 12761065
    [TBL] [Abstract][Full Text] [Related]  

  • 19. TASSER_WT: a protein structure prediction algorithm with accurate predicted contact restraints for difficult protein targets.
    Lee SY; Skolnick J
    Biophys J; 2010 Nov; 99(9):3066-75. PubMed ID: 21044605
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MUFOLD-SS: New deep inception-inside-inception networks for protein secondary structure prediction.
    Fang C; Shang Y; Xu D
    Proteins; 2018 May; 86(5):592-598. PubMed ID: 29492997
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.