BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

231 related articles for article (PubMed ID: 19933160)

  • 1. MADS+: discovery of differential splicing events from Affymetrix exon junction array data.
    Shen S; Warzecha CC; Carstens RP; Xing Y
    Bioinformatics; 2010 Jan; 26(2):268-9. PubMed ID: 19933160
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays.
    Xing Y; Stoilov P; Kapur K; Han A; Jiang H; Shen S; Black DL; Wong WH
    RNA; 2008 Aug; 14(8):1470-9. PubMed ID: 18566192
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.
    Ha KCh; Coulombe-Huntington J; Majewski J
    BMC Genomics; 2009 Nov; 10():519. PubMed ID: 19909511
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model.
    Van Moerbeke M; Kasim A; Shkedy Z
    Sci Rep; 2018 May; 8(1):8331. PubMed ID: 29844567
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Overestimation of alternative splicing caused by variable probe characteristics in exon arrays.
    Gaidatzis D; Jacobeit K; Oakeley EJ; Stadler MB
    Nucleic Acids Res; 2009 Sep; 37(16):e107. PubMed ID: 19528075
    [TBL] [Abstract][Full Text] [Related]  

  • 6. easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.
    Chang TY; Li YY; Jen CH; Yang TP; Lin CH; Hsu MT; Wang HW
    BMC Bioinformatics; 2008 Oct; 9():432. PubMed ID: 18851762
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
    Rambaldi D; Felice B; Praz V; Bucher P; Cittaro D; Guffanti A
    BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S17. PubMed ID: 17430561
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A; Benovoy D; Kwan T; Gaffney DJ; Jensen RV; Majewski J
    BMC Genomics; 2008 Nov; 9():529. PubMed ID: 18990248
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
    Gardina PJ; Clark TA; Shimada B; Staples MK; Yang Q; Veitch J; Schweitzer A; Awad T; Sugnet C; Dee S; Davies C; Williams A; Turpaz Y
    BMC Genomics; 2006 Dec; 7():325. PubMed ID: 17192196
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Detecting tissue-specific alternative splicing and disease-associated aberrant splicing of the PTCH gene with exon junction microarrays.
    Nagao K; Togawa N; Fujii K; Uchikawa H; Kohno Y; Yamada M; Miyashita T
    Hum Mol Genet; 2005 Nov; 14(22):3379-88. PubMed ID: 16203740
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RASA: Robust Alternative Splicing Analysis for Human Transcriptome Arrays.
    Seok J; Xu W; Davis RW; Xiao W
    Sci Rep; 2015 Jul; 5():11917. PubMed ID: 26145443
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparison of RNA-seq and microarray platforms for splice event detection using a cross-platform algorithm.
    Romero JP; Ortiz-Estévez M; Muniategui A; Carrancio S; de Miguel FJ; Carazo F; Montuenga LM; Loos R; Pío R; Trotter MWB; Rubio A
    BMC Genomics; 2018 Sep; 19(1):703. PubMed ID: 30253752
    [TBL] [Abstract][Full Text] [Related]  

  • 13. FIRMA: a method for detection of alternative splicing from exon array data.
    Purdom E; Simpson KM; Robinson MD; Conboy JG; Lapuk AV; Speed TP
    Bioinformatics; 2008 Aug; 24(15):1707-14. PubMed ID: 18573797
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Exon Array Analyzer: a web interface for Affymetrix exon array analysis.
    Gellert P; Uchida S; Braun T
    Bioinformatics; 2009 Dec; 25(24):3323-4. PubMed ID: 19808879
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SplicerEX: a tool for the automated detection and classification of mRNA changes from conventional and splice-sensitive microarray expression data.
    Robinson TJ; Forte E; Salinas RE; Puri S; Marengo M; Garcia-Blanco MA; Luftig MA
    RNA; 2012 Aug; 18(8):1435-45. PubMed ID: 22736799
    [TBL] [Abstract][Full Text] [Related]  

  • 16. EventPointer: an effective identification of alternative splicing events using junction arrays.
    Romero JP; Muniategui A; De Miguel FJ; Aramburu A; Montuenga L; Pio R; Rubio A
    BMC Genomics; 2016 Jun; 17():467. PubMed ID: 27315794
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays.
    Turro E; Lewin A; Rose A; Dallman MJ; Richardson S
    Nucleic Acids Res; 2010 Jan; 38(1):e4. PubMed ID: 19854940
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing.
    Dong L; Jensen RV; De Rienzo A; Gordon GJ; Xu Y; Sugarbaker DJ; Bueno R
    BMC Med Genet; 2009 Dec; 10():149. PubMed ID: 20043850
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.
    Castle J; Garrett-Engele P; Armour CD; Duenwald SJ; Loerch PM; Meyer MR; Schadt EE; Stoughton R; Parrish ML; Shoemaker DD; Johnson JM
    Genome Biol; 2003; 4(10):R66. PubMed ID: 14519201
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Inferring global levels of alternative splicing isoforms using a generative model of microarray data.
    Shai O; Morris QD; Blencowe BJ; Frey BJ
    Bioinformatics; 2006 Mar; 22(5):606-13. PubMed ID: 16403798
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.