271 related articles for article (PubMed ID: 19942311)
41. ncRFP: A Novel end-to-end Method for Non-Coding RNAs Family Prediction Based on Deep Learning.
Wang L; Zheng S; Zhang H; Qiu Z; Zhong X; Liuliu H; Liu Y
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(2):784-789. PubMed ID: 32224462
[TBL] [Abstract][Full Text] [Related]
42. DotAligner: identification and clustering of RNA structure motifs.
Smith MA; Seemann SE; Quek XC; Mattick JS
Genome Biol; 2017 Dec; 18(1):244. PubMed ID: 29284541
[TBL] [Abstract][Full Text] [Related]
43. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
Washietl S; Bernhart SH; Kellis M
Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
[TBL] [Abstract][Full Text] [Related]
44. An Evolutionary Trace method defines functionally important bases and sites common to RNA families.
Novikov IB; Wilkins AD; Lichtarge O
PLoS Comput Biol; 2020 Mar; 16(3):e1007583. PubMed ID: 32208421
[TBL] [Abstract][Full Text] [Related]
45. Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing.
Li T; Wang S; Wu R; Zhou X; Zhu D; Zhang Y
Genomics; 2012 May; 99(5):292-8. PubMed ID: 22374175
[TBL] [Abstract][Full Text] [Related]
46. Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline.
Weinberg Z; Barrick JE; Yao Z; Roth A; Kim JN; Gore J; Wang JX; Lee ER; Block KF; Sudarsan N; Neph S; Tompa M; Ruzzo WL; Breaker RR
Nucleic Acids Res; 2007; 35(14):4809-19. PubMed ID: 17621584
[TBL] [Abstract][Full Text] [Related]
47. Sampled ensemble neutrality as a feature to classify potential structured RNAs.
Pei S; Anthony JS; Meyer MM
BMC Genomics; 2015 Feb; 16(1):35. PubMed ID: 25649229
[TBL] [Abstract][Full Text] [Related]
48. A method for aligning RNA secondary structures and its application to RNA motif detection.
Liu J; Wang JT; Hu J; Tian B
BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
[TBL] [Abstract][Full Text] [Related]
49. Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana.
Qu G; Kruszka K; Plewka P; Yang SY; Chiou TJ; Jarmolowski A; Szweykowska-Kulinska Z; Echeverria M; Karlowski WM
BMC Genomics; 2015 Nov; 16():1009. PubMed ID: 26607788
[TBL] [Abstract][Full Text] [Related]
50. Evolutionary Structure Conservation and Covariance Scores.
Eggenhofer F; Höner Zu Siederdissen C
Methods Mol Biol; 2024; 2726():255-284. PubMed ID: 38780735
[TBL] [Abstract][Full Text] [Related]
51. Identification and classification of conserved RNA secondary structures in the human genome.
Pedersen JS; Bejerano G; Siepel A; Rosenbloom K; Lindblad-Toh K; Lander ES; Kent J; Miller W; Haussler D
PLoS Comput Biol; 2006 Apr; 2(4):e33. PubMed ID: 16628248
[TBL] [Abstract][Full Text] [Related]
52. Computational analysis of RNA structures with chemical probing data.
Ge P; Zhang S
Methods; 2015 Jun; 79-80():60-6. PubMed ID: 25687190
[TBL] [Abstract][Full Text] [Related]
53. Efficient algorithms for probing the RNA mutation landscape.
Waldispühl J; Devadas S; Berger B; Clote P
PLoS Comput Biol; 2008 Aug; 4(8):e1000124. PubMed ID: 18688270
[TBL] [Abstract][Full Text] [Related]
54. Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.
Weinberg Z; Wang JX; Bogue J; Yang J; Corbino K; Moy RH; Breaker RR
Genome Biol; 2010; 11(3):R31. PubMed ID: 20230605
[TBL] [Abstract][Full Text] [Related]
55. Fragrep: an efficient search tool for fragmented patterns in genomic sequences.
Mosig A; Sameith K; Stadler P
Genomics Proteomics Bioinformatics; 2006 Feb; 4(1):56-60. PubMed ID: 16689703
[TBL] [Abstract][Full Text] [Related]
56. [A method for prediction of conserved RNA secondary structures].
Mironov AA
Mol Biol (Mosk); 2007; 41(4):711-8. PubMed ID: 17936993
[TBL] [Abstract][Full Text] [Related]
57. Computational methods in noncoding RNA research.
Machado-Lima A; del Portillo HA; Durham AM
J Math Biol; 2008 Jan; 56(1-2):15-49. PubMed ID: 17786447
[TBL] [Abstract][Full Text] [Related]
58. RADAR: a web server for RNA data analysis and research.
Khaladkar M; Bellofatto V; Wang JT; Tian B; Shapiro BA
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W300-4. PubMed ID: 17517784
[TBL] [Abstract][Full Text] [Related]
59. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
Havgaard JH; Lyngsø RB; Stormo GD; Gorodkin J
Bioinformatics; 2005 May; 21(9):1815-24. PubMed ID: 15657094
[TBL] [Abstract][Full Text] [Related]
60. Finding non-coding RNAs through genome-scale clustering.
Tseng HH; Weinberg Z; Gore J; Breaker RR; Ruzzo WL
J Bioinform Comput Biol; 2009 Apr; 7(2):373-88. PubMed ID: 19340921
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
