These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

106 related articles for article (PubMed ID: 20001084)

  • 21. Quantum clustering and network analysis of MD simulation trajectories to probe the conformational ensembles of protein-ligand interactions.
    Bhattacharyya M; Vishveshwara S
    Mol Biosyst; 2011 Jul; 7(7):2320-30. PubMed ID: 21617814
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Characterization of protein conformational states by normal-mode frequencies.
    Hall BA; Kaye SL; Pang A; Perera R; Biggin PC
    J Am Chem Soc; 2007 Sep; 129(37):11394-401. PubMed ID: 17715919
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Software news and updates. Carma: a molecular dynamics analysis program.
    Glykos NM
    J Comput Chem; 2006 Nov; 27(14):1765-8. PubMed ID: 16917862
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by self-organising map analysis of their molecular dynamics.
    Fraccalvieri D; Tiberti M; Pandini A; Bonati L; Papaleo E
    Mol Biosyst; 2012 Oct; 8(10):2680-91. PubMed ID: 22802143
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A geometric invariant-based framework for the analysis of protein conformational space.
    Tendulkar AV; Sohoni MA; Ogunnaike B; Wangikar PP
    Bioinformatics; 2005 Sep; 21(18):3622-8. PubMed ID: 16096349
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Empirical solvation models in the context of conformational energy searches: application to bovine pancreatic trypsin inhibitor.
    Williams RL; Vila J; Perrot G; Scheraga HA
    Proteins; 1992 Sep; 14(1):110-9. PubMed ID: 1384032
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Can principal components yield a dimension reduced description of protein dynamics on long time scales?
    Lange OF; Grubmüller H
    J Phys Chem B; 2006 Nov; 110(45):22842-52. PubMed ID: 17092036
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Comparative structural studies of psychrophilic and mesophilic protein homologues by molecular dynamics simulation.
    Kundu S; Roy D
    J Mol Graph Model; 2009; 27(8):871-80. PubMed ID: 19223214
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Molecular dynamics of amicyanin reveals a conserved dynamical core for blue copper proteins.
    Rizzuti B; Sportelli L; Guzzi R
    Proteins; 2009 Mar; 74(4):961-71. PubMed ID: 18767164
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Domain motions of the Mip protein from Legionella pneumophila.
    Horstmann M; Ehses P; Schweimer K; Steinert M; Kamphausen T; Fischer G; Hacker J; Rösch P; Faber C
    Biochemistry; 2006 Oct; 45(40):12303-11. PubMed ID: 17014083
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis.
    Flohil JA; Vriend G; Berendsen HJ
    Proteins; 2002 Sep; 48(4):593-604. PubMed ID: 12211026
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Accessible conformations of melanin-concentrating hormone: a molecular dynamics approach.
    Paul PK; Dauber-Osguthorpe P; Campbell MM; Brown DW; Kinsman RG; Moss C; Osguthorpe DJ
    Biopolymers; 1990 Feb; 29(3):623-37. PubMed ID: 2331518
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Molecular dynamics simulation of a high-affinity antibody-protein complex: the binding site is a mosaic of locally flexible and preorganized rigid regions.
    Sinha N; Smith-Gill SJ
    Cell Biochem Biophys; 2005; 43(2):253-73. PubMed ID: 16049350
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Molecular insight into pseudolysin inhibition using the MM-PBSA and LIE methods.
    Adekoya OA; Willassen NP; Sylte I
    J Struct Biol; 2006 Feb; 153(2):129-44. PubMed ID: 16376106
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Assessing equilibration and convergence in biomolecular simulations.
    Smith LJ; Daura X; van Gunsteren WF
    Proteins; 2002 Aug; 48(3):487-96. PubMed ID: 12112673
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
    Mukherjee A; Bagchi B
    J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Molecular dynamics-solvated interaction energy studies of protein-protein interactions: the MP1-p14 scaffolding complex.
    Cui Q; Sulea T; Schrag JD; Munger C; Hung MN; Naïm M; Cygler M; Purisima EO
    J Mol Biol; 2008 Jun; 379(4):787-802. PubMed ID: 18479705
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Structural characterization of the tunnels of Mycobacterium tuberculosis truncated hemoglobin N from molecular dynamics simulations.
    Daigle R; Guertin M; Lagüe P
    Proteins; 2009 May; 75(3):735-47. PubMed ID: 19003999
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Molecular dynamics with weighted time-averaged restraints for a DNA octamer. Dynamic interpretation of nuclear magnetic resonance data.
    Schmitz U; Ulyanov NB; Kumar A; James TL
    J Mol Biol; 1993 Nov; 234(2):373-89. PubMed ID: 8230221
    [TBL] [Abstract][Full Text] [Related]  

  • 40. NMR-detected conformational exchange observed in a computationally designed variant of protein Gbeta1.
    Crowhurst KA; Mayo SL
    Protein Eng Des Sel; 2008 Sep; 21(9):577-87. PubMed ID: 18586670
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.