These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. A Highly Specific Genome-Wide Association Study Integrated with Transcriptome Data Reveals the Contribution of Copy Number Variations to Specialized Metabolites in Arabidopsis thaliana Accessions. Shirai K; Matsuda F; Nakabayashi R; Okamoto M; Tanaka M; Fujimoto A; Shimizu M; Shinozaki K; Seki M; Saito K; Hanada K Mol Biol Evol; 2017 Dec; 34(12):3111-3122. PubMed ID: 28961930 [TBL] [Abstract][Full Text] [Related]
5. Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Tohge T; Nishiyama Y; Hirai MY; Yano M; Nakajima J; Awazuhara M; Inoue E; Takahashi H; Goodenowe DB; Kitayama M; Noji M; Yamazaki M; Saito K Plant J; 2005 Apr; 42(2):218-35. PubMed ID: 15807784 [TBL] [Abstract][Full Text] [Related]
6. Mass spectra-based framework for automated structural elucidation of metabolome data to explore phytochemical diversity. Matsuda F; Nakabayashi R; Sawada Y; Suzuki M; Hirai MY; Kanaya S; Saito K Front Plant Sci; 2011; 2():40. PubMed ID: 22645535 [TBL] [Abstract][Full Text] [Related]
7. Tissue-specific profiling of the Arabidopsis thaliana auxin metabolome. Novák O; Hényková E; Sairanen I; Kowalczyk M; Pospíšil T; Ljung K Plant J; 2012 Nov; 72(3):523-36. PubMed ID: 22725617 [TBL] [Abstract][Full Text] [Related]
8. RefMetaPlant: a reference metabolome database for plants across five major phyla. Shi H; Wu X; Zhu Y; Jiang T; Wang Z; Li X; Liu J; Zhang Y; Chen F; Gao J; Xu X; Zhang G; Xiao N; Feng X; Zhang P; Wu Y; Li A; Chen P; Li X Nucleic Acids Res; 2024 Jan; 52(D1):D1614-D1628. PubMed ID: 37953341 [TBL] [Abstract][Full Text] [Related]
9. High-performance liquid chromatography-mass spectrometry analysis of plant metabolites in brassicaceae. De Vos RC; Schipper B; Hall RD Methods Mol Biol; 2012; 860():111-28. PubMed ID: 22351174 [TBL] [Abstract][Full Text] [Related]
10. Metabolic source isotopic pair labeling and genome-wide association are complementary tools for the identification of metabolite-gene associations in plants. Simpson JP; Wunderlich C; Li X; Svedin E; Dilkes B; Chapple C Plant Cell; 2021 May; 33(3):492-510. PubMed ID: 33955498 [TBL] [Abstract][Full Text] [Related]
11. Metabolome and Transcriptome Analysis of Hexaploid Wu M; Ge Y; Xu C; Wang J Genes (Basel); 2020 Feb; 11(2):. PubMed ID: 32050732 [TBL] [Abstract][Full Text] [Related]
12. Does the Phytochemical Diversity of Wild Plants Like the Delporte C; Noret N; Vanhaverbeke C; Hardy OJ; Martin JF; Tremblay-Franco M; Touboul D; Gorel A; Faes M; Stévigny C; Van Antwerpen P; Souard F Molecules; 2021 Mar; 26(6):. PubMed ID: 33802747 [TBL] [Abstract][Full Text] [Related]
13. FUM2, a Cytosolic Fumarase, Is Essential for Acclimation to Low Temperature in Arabidopsis thaliana. Dyson BC; Miller MA; Feil R; Rattray N; Bowsher CG; Goodacre R; Lunn JE; Johnson GN Plant Physiol; 2016 Sep; 172(1):118-27. PubMed ID: 27440755 [TBL] [Abstract][Full Text] [Related]
15. Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources. Hirai MY; Sawada Y; Kanaya S; Kuromori T; Kobayashi M; Klausnitzer R; Hanada K; Akiyama K; Sakurai T; Saito K; Shinozaki K J Plant Res; 2010 May; 123(3):291-8. PubMed ID: 20369372 [TBL] [Abstract][Full Text] [Related]
16. Combined Analysis of the Metabolome and Transcriptome Identified Candidate Genes Involved in Phenolic Acid Biosynthesis in the Leaves of Lin W; Li Y; Lu Q; Lu H; Li J Int J Mol Sci; 2020 Feb; 21(4):. PubMed ID: 32079236 [TBL] [Abstract][Full Text] [Related]
17. Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana. Pagter M; Alpers J; Erban A; Kopka J; Zuther E; Hincha DK BMC Genomics; 2017 Sep; 18(1):731. PubMed ID: 28915789 [TBL] [Abstract][Full Text] [Related]
18. High-resolution mass spectrometry-based metabolomics reveal the disruption of jasmonic pathway in Arabidopsis thaliana upon copper oxide nanoparticle exposure. Chavez Soria NG; Bisson MA; Atilla-Gokcumen GE; Aga DS Sci Total Environ; 2019 Nov; 693():133443. PubMed ID: 31362232 [TBL] [Abstract][Full Text] [Related]
19. De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar 'Tieguanyin' compared with cultivar 'Benshan'. Guo Y; Zhu C; Zhao S; Zhang S; Wang W; Fu H; Li X; Zhou C; Chen L; Lin Y; Lai Z BMC Genomics; 2019 Apr; 20(1):265. PubMed ID: 30943892 [TBL] [Abstract][Full Text] [Related]