129 related articles for article (PubMed ID: 20026327)
1. Methyl-Typing: an improved and visualized COBRA software for epigenomic studies.
Yang CH; Chuang LY; Cheng YH; Gu DL; Chen CH; Chang HW
FEBS Lett; 2010 Feb; 584(4):739-44. PubMed ID: 20026327
[TBL] [Abstract][Full Text] [Related]
2. A combined bisulfite restriction analysis bioinformatics tool: methyl-typing.
Yang CH; Cheng YH; Chuang LY; Chang HW
Methods Mol Biol; 2011; 791():73-88. PubMed ID: 21913072
[TBL] [Abstract][Full Text] [Related]
3. PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.
Srivastava GP; Guo J; Shi H; Xu D
Bioinformatics; 2008 Sep; 24(17):1837-42. PubMed ID: 18579568
[TBL] [Abstract][Full Text] [Related]
4. Bio-COBRA: absolute quantification of DNA methylation in electrofluidics chips.
Brena RM; Plass C
Methods Mol Biol; 2009; 507():257-69. PubMed ID: 18987820
[TBL] [Abstract][Full Text] [Related]
5. Analysis of locus-specific changes in methylation patterns using a COBRA (combined bisulfite restriction analysis) assay.
Boyko A; Kovalchuk I
Methods Mol Biol; 2010; 631():23-31. PubMed ID: 20204865
[TBL] [Abstract][Full Text] [Related]
6. methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.
Pattyn F; Hoebeeck J; Robbrecht P; Michels E; De Paepe A; Bottu G; Coornaert D; Herzog R; Speleman F; Vandesompele J
BMC Bioinformatics; 2006 Nov; 7():496. PubMed ID: 17094804
[TBL] [Abstract][Full Text] [Related]
7. DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.
Zhang Y; Rohde C; Tierling S; Stamerjohanns H; Reinhardt R; Walter J; Jeltsch A
Methods Mol Biol; 2009; 507():177-87. PubMed ID: 18987815
[TBL] [Abstract][Full Text] [Related]
8. Effects of methylation of non-CpG sequence in the promoter region on the expression of human synaptotagmin XI (syt11).
Inoue S; Oishi M
Gene; 2005 Mar; 348():123-34. PubMed ID: 15777718
[TBL] [Abstract][Full Text] [Related]
9. Prim-SNPing: a primer designer for cost-effective SNP genotyping.
Chang HW; Chuang LY; Cheng YH; Hung YC; Wen CH; Gu DL; Yang CH
Biotechniques; 2009 May; 46(6):421-31. PubMed ID: 19480636
[TBL] [Abstract][Full Text] [Related]
10. Quantification of DNA methylation in electrofluidics chips (Bio-COBRA).
Brena RM; Auer H; Kornacker K; Plass C
Nat Protoc; 2006; 1(1):52-8. PubMed ID: 17406211
[TBL] [Abstract][Full Text] [Related]
11. Treatment of PCR products with exonuclease I and heat-labile alkaline phosphatase improves the visibility of combined bisulfite restriction analysis.
Watanabe K; Emoto N; Sunohara M; Kawakami M; Kage H; Nagase T; Ohishi N; Takai D
Biochem Biophys Res Commun; 2010 Aug; 399(3):422-4. PubMed ID: 20674551
[TBL] [Abstract][Full Text] [Related]
12. Mapping the methylation pattern by bisulfite genomic sequencing of the E-cadherin promoter CpG island in nasopharyngeal carcinoma.
Kao RH; Huang LC; Hsu YH
Anticancer Res; 2002; 22(6C):4109-13. PubMed ID: 12553040
[TBL] [Abstract][Full Text] [Related]
13. BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes.
Tusnády GE; Simon I; Váradi A; Arányi T
Nucleic Acids Res; 2005 Jan; 33(1):e9. PubMed ID: 15653630
[TBL] [Abstract][Full Text] [Related]
14. MethylQuant: a sensitive method for quantifying methylation of specific cytosines within the genome.
Thomassin H; Kress C; Grange T
Nucleic Acids Res; 2004 Dec; 32(21):e168. PubMed ID: 15576675
[TBL] [Abstract][Full Text] [Related]
15. Methylation analysis by DNA immunoprecipitation.
Thu KL; Pikor LA; Kennett JY; Alvarez CE; Lam WL
J Cell Physiol; 2010 Mar; 222(3):522-31. PubMed ID: 20020444
[TBL] [Abstract][Full Text] [Related]
16. Accurate quantification of DNA methylation using combined bisulfite restriction analysis coupled with the Agilent 2100 Bioanalyzer platform.
Brena RM; Auer H; Kornacker K; Hackanson B; Raval A; Byrd JC; Plass C
Nucleic Acids Res; 2006 Feb; 34(3):e17. PubMed ID: 16464820
[TBL] [Abstract][Full Text] [Related]
17. Preparation of genome-wide DNA fragment libraries using bisulfite in polyacrylamide gel electrophoresis slices with formamide denaturation and quality control for massively parallel sequencing by oligonucleotide ligation and detection.
Ranade SS; Chung CB; Zon G; Boyd VL
Anal Biochem; 2009 Jul; 390(2):126-35. PubMed ID: 19379703
[TBL] [Abstract][Full Text] [Related]
18. SNP-RFLPing: restriction enzyme mining for SNPs in genomes.
Chang HW; Yang CH; Chang PL; Cheng YH; Chuang LY
BMC Genomics; 2006 Feb; 7():30. PubMed ID: 16503968
[TBL] [Abstract][Full Text] [Related]
19. DNA methylation of multiple promoter-associated CpG islands in adult acute lymphocytic leukemia.
Garcia-Manero G; Daniel J; Smith TL; Kornblau SM; Lee MS; Kantarjian HM; Issa JP
Clin Cancer Res; 2002 Jul; 8(7):2217-24. PubMed ID: 12114423
[TBL] [Abstract][Full Text] [Related]
20. Methylation-sensitive single-nucleotide primer extension (Ms-SNuPE) for quantitative measurement of DNA methylation.
Gonzalgo ML; Liang G
Nat Protoc; 2007; 2(8):1931-6. PubMed ID: 17703204
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
