These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

209 related articles for article (PubMed ID: 20044352)

  • 1. Computing folding pathways between RNA secondary structures.
    Dotu I; Lorenz WA; Van Hentenryck P; Clote P
    Nucleic Acids Res; 2010 Mar; 38(5):1711-22. PubMed ID: 20044352
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using the fast fourier transform to accelerate the computational search for RNA conformational switches.
    Senter E; Sheikh S; Dotu I; Ponty Y; Clote P
    PLoS One; 2012; 7(12):e50506. PubMed ID: 23284639
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNALOSS: a web server for RNA locally optimal secondary structures.
    Clote P
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W600-4. PubMed ID: 15980545
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Network Properties of the Ensemble of RNA Structures.
    Clote P; Bayegan A
    PLoS One; 2015; 10(10):e0139476. PubMed ID: 26488894
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computing the partition function for kinetically trapped RNA secondary structures.
    Lorenz WA; Clote P
    PLoS One; 2011 Jan; 6(1):e16178. PubMed ID: 21297972
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNAbor: a web server for RNA structural neighbors.
    Freyhult E; Moulton V; Clote P
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W305-9. PubMed ID: 17526527
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model.
    Waldispühl J; Clote P
    J Comput Biol; 2007 Mar; 14(2):190-215. PubMed ID: 17456015
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules.
    Garcia-Martin JA; Dotu I; Clote P
    Nucleic Acids Res; 2015 Jul; 43(W1):W513-21. PubMed ID: 26019176
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Energy parameters and novel algorithms for an extended nearest neighbor energy model of RNA.
    Dotu I; Mechery V; Clote P
    PLoS One; 2014; 9(2):e85412. PubMed ID: 24586240
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Maximum expected accuracy structural neighbors of an RNA secondary structure.
    Clote P; Lou F; Lorenz WA
    BMC Bioinformatics; 2012 Apr; 13 Suppl 5(Suppl 5):S6. PubMed ID: 22537010
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNA Thermodynamic Structural Entropy.
    Garcia-Martin JA; Clote P
    PLoS One; 2015; 10(11):e0137859. PubMed ID: 26555444
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Predicting folding pathways between RNA conformational structures guided by RNA stacks.
    Li Y; Zhang S
    BMC Bioinformatics; 2012 Mar; 13 Suppl 3(Suppl 3):S5. PubMed ID: 22536903
    [TBL] [Abstract][Full Text] [Related]  

  • 13. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F; Ponty Y; Lorenz WA; Clote P
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNA folding pathways and kinetics using 2D energy landscapes.
    Senter E; Dotu I; Clote P
    J Math Biol; 2015 Jan; 70(1-2):173-96. PubMed ID: 24515409
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Memory efficient folding algorithms for circular RNA secondary structures.
    Hofacker IL; Stadler PF
    Bioinformatics; 2006 May; 22(10):1172-6. PubMed ID: 16452114
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Asymptotic number of hairpins of saturated RNA secondary structures.
    Clote P; Kranakis E; Krizanc D
    Bull Math Biol; 2013 Dec; 75(12):2410-30. PubMed ID: 24142625
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNA locally optimal secondary structures.
    Saffarian A; Giraud M; de Monte A; Touzet H
    J Comput Biol; 2012 Oct; 19(10):1120-33. PubMed ID: 23057822
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.
    Garcia-Martin JA; Bayegan AH; Dotu I; Clote P
    BMC Bioinformatics; 2016 Oct; 17(1):424. PubMed ID: 27756204
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design.
    Garcia-Martin JA; Clote P; Dotu I
    J Bioinform Comput Biol; 2013 Apr; 11(2):1350001. PubMed ID: 23600819
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.