These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

175 related articles for article (PubMed ID: 20047957)

  • 1. Tfold: efficient in silico prediction of non-coding RNA secondary structures.
    Engelen S; Tahi F
    Nucleic Acids Res; 2010 Apr; 38(7):2453-66. PubMed ID: 20047957
    [TBL] [Abstract][Full Text] [Related]  

  • 2. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
    Harmanci AO; Sharma G; Mathews DH
    BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Bayesian sampling of evolutionarily conserved RNA secondary structures with pseudoknots.
    Doose G; Metzler D
    Bioinformatics; 2012 Sep; 28(17):2242-8. PubMed ID: 22796961
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Pairwise RNA secondary structure alignment with conserved stem pattern.
    Chiu JK; Chen YP
    Bioinformatics; 2015 Dec; 31(24):3914-21. PubMed ID: 26275897
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structural alignment of pseudoknotted RNA.
    Han B; Dost B; Bafna V; Zhang S
    J Comput Biol; 2008 Jun; 15(5):489-504. PubMed ID: 18549303
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Bi-objective integer programming for RNA secondary structure prediction with pseudoknots.
    Legendre A; Angel E; Tahi F
    BMC Bioinformatics; 2018 Jan; 19(1):13. PubMed ID: 29334887
    [TBL] [Abstract][Full Text] [Related]  

  • 7. C-RCPred: a multi-objective algorithm for interactive secondary structure prediction of RNA complexes integrating user knowledge and SHAPE data.
    Ibéné M; Legendre A; Postic G; Angel E; Tahi F
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37337745
    [TBL] [Abstract][Full Text] [Related]  

  • 8. When homologous sequences meet structural decoys: Accurate contact prediction by tFold in CASP14-(tFold for CASP14 contact prediction).
    Shen T; Wu J; Lan H; Zheng L; Pei J; Wang S; Liu W; Huang J
    Proteins; 2021 Dec; 89(12):1901-1910. PubMed ID: 34473376
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.
    Seetin MG; Mathews DH
    Bioinformatics; 2012 Mar; 28(6):792-8. PubMed ID: 22285566
    [TBL] [Abstract][Full Text] [Related]  

  • 10. An efficient alignment algorithm for searching simple pseudoknots over long genomic sequence.
    Ma C; Wong TK; Lam TW; Hon WK; Sadakane K; Yiu SM
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(6):1629-38. PubMed ID: 22848134
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Memory efficient algorithms for structural alignment of RNAs with pseudoknots.
    Wong TK; Chiu YS; Lam TW; Yiu SM
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):161-8. PubMed ID: 21464506
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNA secondary structure prediction from multi-aligned sequences.
    Hamada M
    Methods Mol Biol; 2015; 1269():17-38. PubMed ID: 25577370
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Efficient annotation of non-coding RNA structures including pseudoknots via automated filters.
    Liu C; Song Y; Hu P; Malmberg RL; Cai L
    Comput Syst Bioinformatics Conf; 2006; ():99-110. PubMed ID: 17369629
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences.
    Pavesi G; Mauri G; Stefani M; Pesole G
    Nucleic Acids Res; 2004; 32(10):3258-69. PubMed ID: 15199174
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
    Ren J; Rastegari B; Condon A; Hoos HH
    RNA; 2005 Oct; 11(10):1494-504. PubMed ID: 16199760
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Xu X; Ji Y; Stormo GD
    Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient conversion of RNA pseudoknots to knot-free structures using a graphical model.
    Chiu JK; Chen YP
    IEEE Trans Biomed Eng; 2015 May; 62(5):1265-71. PubMed ID: 25474805
    [TBL] [Abstract][Full Text] [Related]  

  • 18. R-Coffee: a web server for accurately aligning noncoding RNA sequences.
    Moretti S; Wilm A; Higgins DG; Xenarios I; Notredame C
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W10-3. PubMed ID: 18483080
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Ruan J; Stormo GD; Zhang W
    Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
    Ji Y; Xu X; Stormo GD
    Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.