These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

92 related articles for article (PubMed ID: 20058226)

  • 1. Polymer dynamics in torsion space.
    Henriksson KO; Pesonen J
    J Comput Chem; 2010 Jul; 31(9):1882-8. PubMed ID: 20058226
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Implementation of a symplectic multiple-time-step molecular dynamics algorithm, based on the united-residue mesoscopic potential energy function.
    Rakowski F; Grochowski P; Lesyng B; Liwo A; Scheraga HA
    J Chem Phys; 2006 Nov; 125(20):204107. PubMed ID: 17144690
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics.
    Mathiowetz AM; Jain A; Karasawa N; Goddard WA
    Proteins; 1994 Nov; 20(3):227-47. PubMed ID: 7892172
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Application of torsion angle molecular dynamics for efficient sampling of protein conformations.
    Chen J; Im W; Brooks CL
    J Comput Chem; 2005 Nov; 26(15):1565-78. PubMed ID: 16145655
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Langevin dynamics simulations reveal biologically relevant folds arising from the incorporation of a torsional potential.
    Anjukandi P; Pereira GG; Williams MA
    J Theor Biol; 2010 Aug; 265(3):245-9. PubMed ID: 20471987
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms.
    Barash D; Yang L; Qian X; Schlick T
    J Comput Chem; 2003 Jan; 24(1):77-88. PubMed ID: 12483677
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Constrained geometric simulation of diffusive motion in proteins.
    Wells S; Menor S; Hespenheide B; Thorpe MF
    Phys Biol; 2005 Nov; 2(4):S127-36. PubMed ID: 16280618
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Backbone motions of free and pheromone-bound major urinary protein I studied by molecular dynamics simulation.
    Macek P; Novak P; Zídek L; Sklenar V
    J Phys Chem B; 2007 May; 111(20):5731-9. PubMed ID: 17465536
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Balancing an accurate representation of the molecular surface in generalized born formalisms with integrator stability in molecular dynamics simulations.
    Chocholousová J; Feig M
    J Comput Chem; 2006 Apr; 27(6):719-29. PubMed ID: 16518883
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Polymer translocation: the effect of backflow.
    Ali I; Yeomans JM
    J Chem Phys; 2005 Dec; 123(23):234903. PubMed ID: 16392945
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mesoscopic simulation of entanglements using dissipative particle dynamics: application to polymer brushes.
    Goujon F; Malfreyt P; Tildesley DJ
    J Chem Phys; 2008 Jul; 129(3):034902. PubMed ID: 18647043
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Modeling of intramolecular reactions of polymers: an efficient method based on Brownian dynamics simulations.
    Klenin KV; Langowski J
    J Chem Phys; 2004 Sep; 121(10):4951-60. PubMed ID: 15332931
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Lagrangian molecular dynamics using selected conformational degrees of freedom, with application to the pseudorotation dynamics of furanose rings.
    Rudnicki WR; Lesyng B; Harvey SC
    Biopolymers; 1994 Mar; 34(3):383-92. PubMed ID: 8161710
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Coil-globule transition of a single short polymer chain: an exact enumeration study.
    Ponmurugan M; Narasimhan SL; Krishna PS; Murthy KP
    J Chem Phys; 2007 Apr; 126(14):144906. PubMed ID: 17444742
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Proteins and polymers.
    Banavar JR; Hoang TX; Maritan A
    J Chem Phys; 2005 Jun; 122(23):234910. PubMed ID: 16008490
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Application of the multiensemble sampling to the equilibrium folding of proteins.
    Son HS; Kim SY; Lee J; Han KK
    Bioinformatics; 2006 Aug; 22(15):1832-7. PubMed ID: 16766555
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structure and aggregation of a helix-forming polymer.
    Magee JE; Song Z; Curtis RA; Lue L
    J Chem Phys; 2007 Apr; 126(14):144911. PubMed ID: 17444747
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Partial rigid-body dynamics in NPT, NPAT and NPgammaT ensembles for proteins and membranes.
    Ikeguchi M
    J Comput Chem; 2004 Mar; 25(4):529-41. PubMed ID: 14735571
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Virtual rigid body dynamics.
    Head-Gordon T; Brooks CL
    Biopolymers; 1991 Jan; 31(1):77-100. PubMed ID: 2025686
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Estimating kinetic rates from accelerated molecular dynamics simulations: alanine dipeptide in explicit solvent as a case study.
    de Oliveira CA; Hamelberg D; McCammon JA
    J Chem Phys; 2007 Nov; 127(17):175105. PubMed ID: 17994855
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.