These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

406 related articles for article (PubMed ID: 20077414)

  • 1. Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies.
    Searle BC
    Proteomics; 2010 Mar; 10(6):1265-9. PubMed ID: 20077414
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Elective affinities--bioinformatic analysis of proteomic mass spectrometry data.
    Li X; Pizarro A; Grosser T
    Arch Physiol Biochem; 2009 Dec; 115(5):311-9. PubMed ID: 19911947
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Spectral library searching for peptide identification via tandem MS.
    Lam H; Aebersold R
    Methods Mol Biol; 2010; 604():95-103. PubMed ID: 20013366
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Computational approaches to peptide identification via tandem MS.
    Hubbard SJ
    Methods Mol Biol; 2010; 604():23-42. PubMed ID: 20013362
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies.
    Eddes JS; Kapp EA; Frecklington DF; Connolly LM; Layton MJ; Moritz RL; Simpson RJ
    Proteomics; 2002 Sep; 2(9):1097-103. PubMed ID: 12362328
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon.
    Lietzén N; Natri L; Nevalainen OS; Salmi J; Nyman TA
    J Proteome Res; 2010 Dec; 9(12):6795-800. PubMed ID: 20973569
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An algorithm for identifying multiply modified endogenous proteins using both full-scan and high-resolution tandem mass spectrometric data.
    Mazur MT; Fyhr R
    Rapid Commun Mass Spectrom; 2011 Dec; 25(23):3617-26. PubMed ID: 22095511
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    Mueller LN; Brusniak MY; Mani DR; Aebersold R
    J Proteome Res; 2008 Jan; 7(1):51-61. PubMed ID: 18173218
    [TBL] [Abstract][Full Text] [Related]  

  • 9. De novo sequencing methods in proteomics.
    Hughes C; Ma B; Lajoie GA
    Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Interrogation of MS/MS search data with an pI Filter algorithm to increase protein identification success.
    Uwaje NC; Mueller NS; Maccarrone G; Turck CW
    Electrophoresis; 2007 Jun; 28(12):1867-74. PubMed ID: 17516581
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications.
    Reidegeld KA; Eisenacher M; Kohl M; Chamrad D; Körting G; Blüggel M; Meyer HE; Stephan C
    Proteomics; 2008 Mar; 8(6):1129-37. PubMed ID: 18338823
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Development of an integrated approach for evaluation of 2-D gel image analysis: impact of multiple proteins in single spots on comparative proteomics in conventional 2-D gel/MALDI workflow.
    Yang Y; Thannhauser TW; Li L; Zhang S
    Electrophoresis; 2007 Jun; 28(12):2080-94. PubMed ID: 17486657
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mining proteomic MS/MS data for MRM transitions.
    Chem Mead JA; Bianco L; Bessant C
    Methods Mol Biol; 2010; 604():187-99. PubMed ID: 20013372
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Quantitative proteomics using uniform (15)N-labeling, MASCOT, and the trans-proteomic pipeline.
    Palmblad M; Bindschedler LV; Cramer R
    Proteomics; 2007 Oct; 7(19):3462-9. PubMed ID: 17726679
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Trans-proteomic pipeline: a pipeline for proteomic analysis.
    Pedrioli PG
    Methods Mol Biol; 2010; 604():213-38. PubMed ID: 20013374
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data.
    Vogel C; Marcotte EM
    Nat Protoc; 2008; 3(9):1444-51. PubMed ID: 18772871
    [TBL] [Abstract][Full Text] [Related]  

  • 17. STEM: a software tool for large-scale proteomic data analyses.
    Shinkawa T; Taoka M; Yamauchi Y; Ichimura T; Kaji H; Takahashi N; Isobe T
    J Proteome Res; 2005; 4(5):1826-31. PubMed ID: 16212438
    [TBL] [Abstract][Full Text] [Related]  

  • 18. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improving peptide identification using an empirical peptide retention time database.
    Sun W; Zhang L; Yang R; Shao C; Zhang Z; Gao Y
    Rapid Commun Mass Spectrom; 2009 Jan; 23(1):109-18. PubMed ID: 19065623
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
    Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.