BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 20080508)

  • 1. MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes.
    de Souza GA; Arntzen MØ; Wiker HG
    Bioinformatics; 2010 Mar; 26(5):698-9. PubMed ID: 20080508
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database.
    de Souza GA; Arntzen MØ; Fortuin S; Schürch AC; Målen H; McEvoy CR; van Soolingen D; Thiede B; Warren RM; Wiker HG
    Mol Cell Proteomics; 2011 Jan; 10(1):M110.002527. PubMed ID: 21030493
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Proteomics FASTA archive and reference resource.
    Falkner JA; Hill JA; Andrews PC
    Proteomics; 2008 May; 8(9):1756-7. PubMed ID: 18442177
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.
    Falkner JA; Falkner JW; Andrews PC
    Bioinformatics; 2007 Jan; 23(2):262-3. PubMed ID: 17121776
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ProteomeCommons.org JAF: reference information and tools for proteomics.
    Falkner JA; Falkner JW; Andrews PC
    Bioinformatics; 2006 Mar; 22(5):632-3. PubMed ID: 16434446
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations.
    Tovchigrechko A; Venepally P; Payne SH
    Bioinformatics; 2014 May; 30(10):1469-70. PubMed ID: 24470574
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Tranche distributed repository and ProteomeCommons.org.
    Smith BE; Hill JA; Gjukich MA; Andrews PC
    Methods Mol Biol; 2011; 696():123-45. PubMed ID: 21063945
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PepC: proteomics software for identifying differentially expressed proteins based on spectral counting.
    Heinecke NL; Pratt BS; Vaisar T; Becker L
    Bioinformatics; 2010 Jun; 26(12):1574-5. PubMed ID: 20413636
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Installation and use of the Computational Proteomics Analysis System (CPAS).
    Myers T; Law W; Eng JK; McIntosh M
    Curr Protoc Bioinformatics; 2007 Jun; Chapter 13():Unit 13.5. PubMed ID: 18428786
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The GPMDB REST interface.
    Fenyö D; Beavis RC
    Bioinformatics; 2015 Jun; 31(12):2056-8. PubMed ID: 25697819
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Proteomic analysis of a multi-resistant clinical Escherichia coli isolate of unknown genomic background.
    Tomazella GG; Risberg K; Mylvaganam H; Lindemann PC; Thiede B; Souza GA; Wiker HG
    J Proteomics; 2012 Mar; 75(6):1830-7. PubMed ID: 22236517
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Pyteomics--a Python framework for exploratory data analysis and rapid software prototyping in proteomics.
    Goloborodko AA; Levitsky LI; Ivanov MV; Gorshkov MV
    J Am Soc Mass Spectrom; 2013 Feb; 24(2):301-4. PubMed ID: 23292976
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Pripper: prediction of caspase cleavage sites from whole proteomes.
    Piippo M; Lietzén N; Nevalainen OS; Salmi J; Nyman TA
    BMC Bioinformatics; 2010 Jun; 11():320. PubMed ID: 20546630
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Integration of gel-based proteome data with pProRep.
    Laukens K; Matthiesen R; Lemière F; Esmans E; Onckelen HV; Jensen ON; Witters E
    Bioinformatics; 2006 Nov; 22(22):2838-40. PubMed ID: 17032679
    [TBL] [Abstract][Full Text] [Related]  

  • 15. IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics.
    Li D; Gao W; Ling CX; Wang X; Sun R; He S
    Bioinformatics; 2006 Oct; 22(20):2572-3. PubMed ID: 16945944
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ProteoWizard: open source software for rapid proteomics tools development.
    Kessner D; Chambers M; Burke R; Agus D; Mallick P
    Bioinformatics; 2008 Nov; 24(21):2534-6. PubMed ID: 18606607
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The wildcat toolbox: a set of perl script utilities for use in peptide mass spectral database searching and proteomics experiments.
    Haynes PA; Miller S; Radabaugh T; Galligan M; Breci L; Rohrbough J; Hickman F; Merchant N
    J Biomol Tech; 2006 Apr; 17(2):97-102. PubMed ID: 16741236
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ProSight Lite: graphical software to analyze top-down mass spectrometry data.
    Fellers RT; Greer JB; Early BP; Yu X; LeDuc RD; Kelleher NL; Thomas PM
    Proteomics; 2015 Apr; 15(7):1235-8. PubMed ID: 25828799
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ProteomeCommons.org collaborative annotation and project management resource integrated with the Tranche repository.
    Hill JA; Smith BE; Papoulias PG; Andrews PC
    J Proteome Res; 2010 Jun; 9(6):2809-11. PubMed ID: 20356086
    [TBL] [Abstract][Full Text] [Related]  

  • 20. REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
    Linke B; McHardy AC; Neuweger H; Krause L; Meyer F
    Appl Bioinformatics; 2006; 5(3):193-8. PubMed ID: 16922601
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.