88 related articles for article (PubMed ID: 20090177)
21. Central and local limit theorems for RNA structures.
Jin EY; Reidys CM
J Theor Biol; 2008 Feb; 250(3):547-59. PubMed ID: 18045620
[TBL] [Abstract][Full Text] [Related]
22. On the algebraic representation of RNA secondary structures with G x U pairs.
Casasnovas J; Miro-Julia J; Rosselló F
J Math Biol; 2003 Jul; 47(1):1-22. PubMed ID: 12827446
[TBL] [Abstract][Full Text] [Related]
23. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
Ji Y; Xu X; Stormo GD
Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926
[TBL] [Abstract][Full Text] [Related]
24. 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
Seibel PN; Müller T; Dandekar T; Schultz J; Wolf M
BMC Bioinformatics; 2006 Nov; 7():498. PubMed ID: 17101042
[TBL] [Abstract][Full Text] [Related]
25. Prediction of RNA secondary structure using generalized centroid estimators.
Hamada M; Kiryu H; Sato K; Mituyama T; Asai K
Bioinformatics; 2009 Feb; 25(4):465-73. PubMed ID: 19095700
[TBL] [Abstract][Full Text] [Related]
26. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
Busch A; Backofen R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
[TBL] [Abstract][Full Text] [Related]
27. STR2: a structure to string approach for locating G-box riboswitch shapes in pre-selected genes.
Bergig O; Barash D; Nudler E; Kedem K
In Silico Biol; 2004; 4(4):593-604. PubMed ID: 15752075
[TBL] [Abstract][Full Text] [Related]
28. Nucleic acid sequence design via efficient ensemble defect optimization.
Zadeh JN; Wolfe BR; Pierce NA
J Comput Chem; 2011 Feb; 32(3):439-52. PubMed ID: 20717905
[TBL] [Abstract][Full Text] [Related]
29. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data.
Parisien M; Major F
Nature; 2008 Mar; 452(7183):51-5. PubMed ID: 18322526
[TBL] [Abstract][Full Text] [Related]
30. Marginalized kernels for RNA sequence data analysis.
Kin T; Tsuda K; Asai K
Genome Inform; 2002; 13():112-22. PubMed ID: 14571380
[TBL] [Abstract][Full Text] [Related]
31. Statistics of RNA secondary structures.
Fontana W; Konings DA; Stadler PF; Schuster P
Biopolymers; 1993 Sep; 33(9):1389-404. PubMed ID: 7691201
[TBL] [Abstract][Full Text] [Related]
32. Asymptotics of RNA shapes.
Lorenz WA; Ponty Y; Clote P
J Comput Biol; 2008; 15(1):31-63. PubMed ID: 18257676
[TBL] [Abstract][Full Text] [Related]
33. General combinatorics of RNA secondary structure.
Liao B; Wang TM
Math Biosci; 2004 Sep; 191(1):69-81. PubMed ID: 15312744
[TBL] [Abstract][Full Text] [Related]
34. Mining characteristic relations bind to RNA secondary structures.
Chen Q; Chen YP
IEEE Trans Inf Technol Biomed; 2010 Jan; 14(1):10-5. PubMed ID: 19783506
[TBL] [Abstract][Full Text] [Related]
35. K-partite RNA secondary structures.
Jiang M; Tejada PJ; Lasisi RO; Cheng S; Fechser DS
J Comput Biol; 2010 Jul; 17(7):915-25. PubMed ID: 20632871
[TBL] [Abstract][Full Text] [Related]
36. Approximation algorithms for predicting RNA secondary structures with arbitrary pseudoknots.
Jiang M
IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(2):323-32. PubMed ID: 20431151
[TBL] [Abstract][Full Text] [Related]
37. Shapes of RNA pseudoknot structures.
Reidys CM; Wang RR
J Comput Biol; 2010 Nov; 17(11):1575-90. PubMed ID: 20868269
[TBL] [Abstract][Full Text] [Related]
38. An algebraic representation of RNA secondary structures.
Magarshak Y; Benham CJ
J Biomol Struct Dyn; 1992 Dec; 10(3):465-88. PubMed ID: 1283516
[TBL] [Abstract][Full Text] [Related]
39. Abstract shape analysis of RNA.
Janssen S; Giegerich R
Methods Mol Biol; 2014; 1097():215-45. PubMed ID: 24639162
[TBL] [Abstract][Full Text] [Related]
40. Fuzzy kernel clustering of RNA secondary structure ensemble using a novel similarity metric.
Liu Q; Zhang Y; Xu Y; Ye X
J Biomol Struct Dyn; 2008 Jun; 25(6):685-96. PubMed ID: 18399702
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
