BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

222 related articles for article (PubMed ID: 20100813)

  • 1. Predicting loop-helix tertiary structural contacts in RNA pseudoknots.
    Cao S; Giedroc DP; Chen SJ
    RNA; 2010 Mar; 16(3):538-52. PubMed ID: 20100813
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
    Cao S; Chen SJ
    RNA; 2009 Apr; 15(4):696-706. PubMed ID: 19237463
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Physics-based de novo prediction of RNA 3D structures.
    Cao S; Chen SJ
    J Phys Chem B; 2011 Apr; 115(14):4216-26. PubMed ID: 21413701
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Thermodynamic analysis of conserved loop-stem interactions in P1-P2 frameshifting RNA pseudoknots from plant Luteoviridae.
    Nixon PL; Cornish PV; Suram SV; Giedroc DP
    Biochemistry; 2002 Aug; 41(34):10665-74. PubMed ID: 12186552
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Enthalpy-driven RNA folding: single-molecule thermodynamics of tetraloop-receptor tertiary interaction.
    Fiore JL; Kraemer B; Koberling F; Edmann R; Nesbitt DJ
    Biochemistry; 2009 Mar; 48(11):2550-8. PubMed ID: 19186984
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Folding thermodynamics of pseudoknotted chain conformations.
    Kopeikin Z; Chen SJ
    J Chem Phys; 2006 Apr; 124(15):154903. PubMed ID: 16674261
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Thermodynamics of unfolding mechanisms of mouse mammary tumor virus pseudoknot from a coarse-grained loop-entropy model.
    Tang K; Roca J; Chen R; Ansari A; Liang J
    J Biol Phys; 2022 Jun; 48(2):129-150. PubMed ID: 35445347
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fluorescence competition assay measurements of free energy changes for RNA pseudoknots.
    Liu B; Shankar N; Turner DH
    Biochemistry; 2010 Jan; 49(3):623-34. PubMed ID: 19921809
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.
    Vallone PM; Paner TM; Hilario J; Lane MJ; Faldasz BD; Benight AS
    Biopolymers; 1999 Oct; 50(4):425-42. PubMed ID: 10423551
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Predicting RNA pseudoknot folding thermodynamics.
    Cao S; Chen SJ
    Nucleic Acids Res; 2006; 34(9):2634-52. PubMed ID: 16709732
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Method to Predict the Structure and Stability of RNA/RNA Complexes.
    Xu X; Chen SJ
    Methods Mol Biol; 2016; 1490():63-72. PubMed ID: 27665593
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA.
    Movileanu L; Benevides JM; Thomas GJ
    Nucleic Acids Res; 2002 Sep; 30(17):3767-77. PubMed ID: 12202762
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Topological constraints of RNA pseudoknotted and loop-kissing motifs: applications to three-dimensional structure prediction.
    Xu X; Chen SJ
    Nucleic Acids Res; 2020 Jul; 48(12):6503-6512. PubMed ID: 32491164
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Vfold: a web server for RNA structure and folding thermodynamics prediction.
    Xu X; Zhao P; Chen SJ
    PLoS One; 2014; 9(9):e107504. PubMed ID: 25215508
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.
    Blose JM; Manni ML; Klapec KA; Stranger-Jones Y; Zyra AC; Sim V; Griffith CA; Long JD; Serra MJ
    Biochemistry; 2007 Dec; 46(51):15123-35. PubMed ID: 18047298
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA structure at high resolution.
    Shen LX; Cai Z; Tinoco I
    FASEB J; 1995 Aug; 9(11):1023-33. PubMed ID: 7544309
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A pseudoknotted RNA oligonucleotide.
    Puglisi JD; Wyatt JR; Tinoco I
    Nature; 1988 Jan; 331(6153):283-6. PubMed ID: 3336440
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Polymer Physics Framework for the Entropy of Arbitrary Pseudoknots.
    Kimchi O; Cragnolini T; Brenner MP; Colwell LJ
    Biophys J; 2019 Aug; 117(3):520-532. PubMed ID: 31353036
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA folding: conformational statistics, folding kinetics, and ion electrostatics.
    Chen SJ
    Annu Rev Biophys; 2008; 37():197-214. PubMed ID: 18573079
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Vfold2D-MC: A Physics-Based Hybrid Model for Predicting RNA Secondary Structure Folding.
    Cheng Y; Zhang S; Xu X; Chen SJ
    J Phys Chem B; 2021 Sep; 125(36):10108-10118. PubMed ID: 34473508
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.