189 related articles for article (PubMed ID: 20106904)
1. Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin.
Remmert M; Biegert A; Linke D; Lupas AN; Söding J
Mol Biol Evol; 2010 Jun; 27(6):1348-58. PubMed ID: 20106904
[TBL] [Abstract][Full Text] [Related]
2. Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels.
Arnold T; Poynor M; Nussberger S; Lupas AN; Linke D
J Mol Biol; 2007 Mar; 366(4):1174-84. PubMed ID: 17217961
[TBL] [Abstract][Full Text] [Related]
3. Alignment and structure prediction of divergent protein families: periplasmic and outer membrane proteins of bacterial efflux pumps.
Johnson JM; Church GM
J Mol Biol; 1999 Apr; 287(3):695-715. PubMed ID: 10092468
[TBL] [Abstract][Full Text] [Related]
4. Evolutionary pathways of repeat protein topology in bacterial outer membrane proteins.
Franklin MW; Nepomnyachyi S; Feehan R; Ben-Tal N; Kolodny R; Slusky JS
Elife; 2018 Nov; 7():. PubMed ID: 30489257
[TBL] [Abstract][Full Text] [Related]
5. TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins.
Garrow AG; Agnew A; Westhead DR
BMC Bioinformatics; 2005 Mar; 6():56. PubMed ID: 15769290
[TBL] [Abstract][Full Text] [Related]
6. A novel family of channel-forming, autotransporting, bacterial virulence factors.
Loveless BJ; Saier MH
Mol Membr Biol; 1997; 14(3):113-23. PubMed ID: 9394291
[TBL] [Abstract][Full Text] [Related]
7. Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information.
Mizianty MJ; Kurgan L
Proteins; 2011 Jan; 79(1):294-303. PubMed ID: 21064129
[TBL] [Abstract][Full Text] [Related]
8. Structure of the outer membrane protein A transmembrane domain.
Pautsch A; Schulz GE
Nat Struct Biol; 1998 Nov; 5(11):1013-7. PubMed ID: 9808047
[TBL] [Abstract][Full Text] [Related]
9. Molecular architecture and function of the Omp85 family of proteins.
Gentle IE; Burri L; Lithgow T
Mol Microbiol; 2005 Dec; 58(5):1216-25. PubMed ID: 16313611
[TBL] [Abstract][Full Text] [Related]
10. The Origin of Mitochondria-Specific Outer Membrane β-Barrels from an Ancestral Bacterial Fragment.
Pereira J; Lupas AN
Genome Biol Evol; 2018 Oct; 10(10):2759-2765. PubMed ID: 30265295
[TBL] [Abstract][Full Text] [Related]
11. Gram-negative outer-membrane proteins with multiple β-barrel domains.
Solan R; Pereira J; Lupas AN; Kolodny R; Ben-Tal N
Proc Natl Acad Sci U S A; 2021 Aug; 118(31):. PubMed ID: 34330833
[TBL] [Abstract][Full Text] [Related]
12. Characterization of the Neisseria Iga beta-core. The essential unit for outer membrane targeting and extracellular protein secretion.
Klauser T; Krämer J; Otzelberger K; Pohlner J; Meyer TF
J Mol Biol; 1993 Dec; 234(3):579-93. PubMed ID: 8254661
[TBL] [Abstract][Full Text] [Related]
13. Predicting transmembrane beta-barrels and interstrand residue interactions from sequence.
Waldispühl J; Berger B; Clote P; Steyaert JM
Proteins; 2006 Oct; 65(1):61-74. PubMed ID: 16858668
[TBL] [Abstract][Full Text] [Related]
14. PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins.
Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W400-4. PubMed ID: 15215419
[TBL] [Abstract][Full Text] [Related]
15. Efflux Pumps Represent Possible Evolutionary Convergence onto the β-Barrel Fold.
Franklin MW; Nepomnyachiy S; Feehan R; Ben-Tal N; Kolodny R; Slusky JSG
Structure; 2018 Sep; 26(9):1266-1274.e2. PubMed ID: 30057025
[TBL] [Abstract][Full Text] [Related]
16. Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily.
Wrabl JO; Grishin NV
J Mol Biol; 2001 Nov; 314(3):365-74. PubMed ID: 11846551
[TBL] [Abstract][Full Text] [Related]
17. Sequence motifs and antimotifs in beta-barrel membrane proteins from a genome-wide analysis: the Ala-Tyr dichotomy and chaperone binding motifs.
Jackups R; Cheng S; Liang J
J Mol Biol; 2006 Oct; 363(2):611-23. PubMed ID: 16973175
[TBL] [Abstract][Full Text] [Related]
18. AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels.
Coles M; Djuranovic S; Söding J; Frickey T; Koretke K; Truffault V; Martin J; Lupas AN
Structure; 2005 Jun; 13(6):919-28. PubMed ID: 15939023
[TBL] [Abstract][Full Text] [Related]
19. Hemoglobin-binding protein HgbA in the outer membrane of Actinobacillus pleuropneumoniae: homology modelling reveals regions of potential interactions with hemoglobin and heme.
Pawelek PD; Coulton JW
J Mol Graph Model; 2004 Dec; 23(3):211-21. PubMed ID: 15530817
[TBL] [Abstract][Full Text] [Related]
20. Membrane assembly of the Escherichia coli outer membrane protein OmpA: exploring sequence constraints on transmembrane beta-strands.
Koebnik R
J Mol Biol; 1999 Jan; 285(4):1801-10. PubMed ID: 9917413
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
