These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

84 related articles for article (PubMed ID: 20113067)

  • 1. Coupling of twist and writhe in short DNA loops.
    Medalion S; Rappaport SM; Rabin Y
    J Chem Phys; 2010 Jan; 132(4):045101. PubMed ID: 20113067
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Efficient chain moves for Monte Carlo simulations of a wormlike DNA model: excluded volume, supercoils, site juxtapositions, knots, and comparisons with random-flight and lattice models.
    Liu Z; Chan HS
    J Chem Phys; 2008 Apr; 128(14):145104. PubMed ID: 18412482
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics.
    Kahn JD; Crothers DM
    J Mol Biol; 1998 Feb; 276(1):287-309. PubMed ID: 9514724
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Monte Carlo analysis of the conformation of DNA catenanes.
    Vologodskii AV; Cozzarelli NR
    J Mol Biol; 1993 Aug; 232(4):1130-40. PubMed ID: 8371271
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluating changes of writhe in computer simulations of supercoiled DNA.
    de Vries R
    J Chem Phys; 2005 Feb; 122(6):064905. PubMed ID: 15740406
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Terminal twist-induced writhe of DNA with intrinsic curvature.
    Hu K
    Bull Math Biol; 2007 Apr; 69(3):1019-30. PubMed ID: 17377833
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The twist, writhe, and linking number distributions in closed circular DNA.
    Tobias I
    J Biomol Struct Dyn; 1985 Oct; 3(2):315-25. PubMed ID: 3917023
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dependence on temperature and guanine-cytosine content of bubble length distributions in DNA.
    Kalosakas G; Ares S
    J Chem Phys; 2009 Jun; 130(23):235104. PubMed ID: 19548765
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Effect of anisotropy of the bending rigidity on the supercoiling free energy of small circular DNAs.
    Schurr JM; Babcock HP; Gebe JA
    Biopolymers; 1995 Nov; 36(5):633-41. PubMed ID: 7578955
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs.
    Gebe JA; Allison SA; Clendenning JB; Schurr JM
    Biophys J; 1995 Feb; 68(2):619-33. PubMed ID: 7696514
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Thermodynamics of the first transition in writhe of a small circular DNA by Monte Carlo simulation.
    Gebe JA; Schurr JM
    Biopolymers; 1996 Apr; 38(4):493-503. PubMed ID: 8867211
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition.
    Jian H; Schlick T; Vologodskii A
    J Mol Biol; 1998 Nov; 284(2):287-96. PubMed ID: 9813118
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Conformational response of supercoiled DNA to confinement in a nanochannel.
    Lim W; Ng SY; Lee C; Feng YP; van der Maarel JR
    J Chem Phys; 2008 Oct; 129(16):165102. PubMed ID: 19045317
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Topological distributions and the torsional rigidity of DNA. A Monte Carlo study of DNA circles.
    Levene SD; Crothers DM
    J Mol Biol; 1986 May; 189(1):73-83. PubMed ID: 3783681
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Statistical mechanics of developable ribbons.
    Giomi L; Mahadevan L
    Phys Rev Lett; 2010 Jun; 104(23):238104. PubMed ID: 20867276
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computer simulation of protein-induced structural changes in closed circular DNA.
    Zhang P; Tobias I; Olson WK
    J Mol Biol; 1994 Sep; 242(3):271-90. PubMed ID: 8089847
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An evolutionary Monte Carlo algorithm for predicting DNA hybridization.
    Kim JS; Lee JW; Noh YK; Park JY; Lee DY; Yang KA; Chai YG; Kim JC; Zhang BT
    Biosystems; 2008 Jan; 91(1):69-75. PubMed ID: 17897776
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.
    Olson WK; Marky NL; Jernigan RL; Zhurkin VB
    J Mol Biol; 1993 Jul; 232(2):530-54. PubMed ID: 8345522
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Effects of Na+ and Mg2+ on the structures of supercoiled DNAs: comparison of simulations with experiments.
    Gebe JA; Delrow JJ; Heath PJ; Fujimoto BS; Stewart DW; Schurr JM
    J Mol Biol; 1996 Sep; 262(2):105-28. PubMed ID: 8831783
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular modeling of porous carbons using the hybrid reverse Monte Carlo method.
    Jain SK; Pellenq RJ; Pikunic JP; Gubbins KE
    Langmuir; 2006 Nov; 22(24):9942-8. PubMed ID: 17106983
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.