BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

110 related articles for article (PubMed ID: 20118117)

  • 21. Domain boundary prediction based on profile domain linker propensity index.
    Dong Q; Wang X; Lin L; Xu Z
    Comput Biol Chem; 2006 Apr; 30(2):127-33. PubMed ID: 16531120
    [TBL] [Abstract][Full Text] [Related]  

  • 22. The SUPERFAMILY database in 2004: additions and improvements.
    Madera M; Vogel C; Kummerfeld SK; Chothia C; Gough J
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D235-9. PubMed ID: 14681402
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Armadillo: domain boundary prediction by amino acid composition.
    Dumontier M; Yao R; Feldman HJ; Hogue CW
    J Mol Biol; 2005 Jul; 350(5):1061-73. PubMed ID: 15978619
    [TBL] [Abstract][Full Text] [Related]  

  • 24. SnapDRAGON: a method to delineate protein structural domains from sequence data.
    George RA; Heringa J
    J Mol Biol; 2002 Feb; 316(3):839-51. PubMed ID: 11866536
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
    Gough J; Karplus K; Hughey R; Chothia C
    J Mol Biol; 2001 Nov; 313(4):903-19. PubMed ID: 11697912
    [TBL] [Abstract][Full Text] [Related]  

  • 26. EVEREST: a collection of evolutionary conserved protein domains.
    Portugaly E; Linial N; Linial M
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D241-6. PubMed ID: 17099230
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Improving the accuracy of transmembrane protein topology prediction using evolutionary information.
    Jones DT
    Bioinformatics; 2007 Mar; 23(5):538-44. PubMed ID: 17237066
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Website review: interPro (the integrated resource of protein domains and functional sites).
    Southan C
    Yeast; 2000 Dec; 17(4):327-34. PubMed ID: 11119311
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Identification of putative domain linkers by a neural network - application to a large sequence database.
    Miyazaki S; Kuroda Y; Yokoyama S
    BMC Bioinformatics; 2006 Jun; 7():323. PubMed ID: 16800897
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).
    Beaussart F; Weiner J; Bornberg-Bauer E
    Bioinformatics; 2007 Jul; 23(14):1834-6. PubMed ID: 17483506
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Domain-based small molecule binding site annotation.
    Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
    BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Domain-based and family-specific sequence identity thresholds increase the levels of reliable protein function transfer.
    Addou S; Rentzsch R; Lee D; Orengo CA
    J Mol Biol; 2009 Mar; 387(2):416-30. PubMed ID: 19135455
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A rapid classification protocol for the CATH Domain Database to support structural genomics.
    Pearl FM; Martin N; Bray JE; Buchan DW; Harrison AP; Lee D; Reeves GA; Shepherd AJ; Sillitoe I; Todd AE; Thornton JM; Orengo CA
    Nucleic Acids Res; 2001 Jan; 29(1):223-7. PubMed ID: 11125098
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PIBASE: a comprehensive database of structurally defined protein interfaces.
    Davis FP; Sali A
    Bioinformatics; 2005 May; 21(9):1901-7. PubMed ID: 15657096
    [TBL] [Abstract][Full Text] [Related]  

  • 35. InterPro and InterProScan: tools for protein sequence classification and comparison.
    Mulder N; Apweiler R
    Methods Mol Biol; 2007; 396():59-70. PubMed ID: 18025686
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
    Das S; Lee D; Sillitoe I; Dawson NL; Lees JG; Orengo CA
    Bioinformatics; 2015 Nov; 31(21):3460-7. PubMed ID: 26139634
    [TBL] [Abstract][Full Text] [Related]  

  • 37. SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles.
    Gewehr JE; Zimmer R
    Bioinformatics; 2006 Jan; 22(2):181-7. PubMed ID: 16267083
    [TBL] [Abstract][Full Text] [Related]  

  • 38. New developments in the InterPro database.
    Mulder NJ; Apweiler R; Attwood TK; Bairoch A; Bateman A; Binns D; Bork P; Buillard V; Cerutti L; Copley R; Courcelle E; Das U; Daugherty L; Dibley M; Finn R; Fleischmann W; Gough J; Haft D; Hulo N; Hunter S; Kahn D; Kanapin A; Kejariwal A; Labarga A; Langendijk-Genevaux PS; Lonsdale D; Lopez R; Letunic I; Madera M; Maslen J; McAnulla C; McDowall J; Mistry J; Mitchell A; Nikolskaya AN; Orchard S; Orengo C; Petryszak R; Selengut JD; Sigrist CJ; Thomas PD; Valentin F; Wilson D; Wu CH; Yeats C
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D224-8. PubMed ID: 17202162
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The CATH database: an extended protein family resource for structural and functional genomics.
    Pearl FM; Bennett CF; Bray JE; Harrison AP; Martin N; Shepherd A; Sillitoe I; Thornton J; Orengo CA
    Nucleic Acids Res; 2003 Jan; 31(1):452-5. PubMed ID: 12520050
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Using CATH-Gene3D to Analyze the Sequence, Structure, and Function of Proteins.
    Sillitoe I; Lewis T; Orengo C
    Curr Protoc Bioinformatics; 2015 Jun; 50():1.28.1-1.28.21. PubMed ID: 26087950
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.