464 related articles for article (PubMed ID: 20122241)
1. Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data.
Gupta R; Wikramasinghe P; Bhattacharyya A; Perez FA; Pal S; Davuluri RV
BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S65. PubMed ID: 20122241
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.
Sun H; Wu J; Wickramasinghe P; Pal S; Gupta R; Bhattacharyya A; Agosto-Perez FJ; Showe LC; Huang TH; Davuluri RV
Nucleic Acids Res; 2011 Jan; 39(1):190-201. PubMed ID: 20843783
[TBL] [Abstract][Full Text] [Related]
3. Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.
Pal S; Gupta R; Davuluri RV
Methods Mol Biol; 2014; 1176():1-9. PubMed ID: 25030914
[TBL] [Abstract][Full Text] [Related]
4. Temporal ChIP-on-Chip of RNA-Polymerase-II to detect novel gene activation events during photoreceptor maturation.
Tummala P; Mali RS; Guzman E; Zhang X; Mitton KP
Mol Vis; 2010 Feb; 16():252-71. PubMed ID: 20161818
[TBL] [Abstract][Full Text] [Related]
5. Genome annotation test with validation on transcription start site and ChIP-Seq for Pol-II binding data.
Bedo J; Kowalczyk A
Bioinformatics; 2011 Jun; 27(12):1610-7. PubMed ID: 21558156
[TBL] [Abstract][Full Text] [Related]
6. Integrative genome-wide chromatin signature analysis using finite mixture models.
Taslim C; Lin S; Huang K; Huang TH
BMC Genomics; 2012; 13 Suppl 6(Suppl 6):S3. PubMed ID: 23134707
[TBL] [Abstract][Full Text] [Related]
7. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.
Ho JW; Bishop E; Karchenko PV; Nègre N; White KP; Park PJ
BMC Genomics; 2011 Feb; 12():134. PubMed ID: 21356108
[TBL] [Abstract][Full Text] [Related]
8. ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.
Zhu LJ; Gazin C; Lawson ND; Pagès H; Lin SM; Lapointe DS; Green MR
BMC Bioinformatics; 2010 May; 11():237. PubMed ID: 20459804
[TBL] [Abstract][Full Text] [Related]
9. MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data.
Gupta R; Bhattacharyya A; Agosto-Perez FJ; Wickramasinghe P; Davuluri RV
Nucleic Acids Res; 2011 Jan; 39(Database issue):D92-7. PubMed ID: 21097880
[TBL] [Abstract][Full Text] [Related]
10. dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data.
Chung D; Park D; Myers K; Grass J; Kiley P; Landick R; Keleş S
PLoS Comput Biol; 2013; 9(10):e1003246. PubMed ID: 24146601
[TBL] [Abstract][Full Text] [Related]
11. Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments.
Jain D; Baldi S; Zabel A; Straub T; Becker PB
Nucleic Acids Res; 2015 Aug; 43(14):6959-68. PubMed ID: 26117547
[TBL] [Abstract][Full Text] [Related]
12. Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster.
Chen MJ; Chen LK; Lai YS; Lin YY; Wu DC; Tung YA; Liu KY; Shih HT; Chen YJ; Lin YL; Ma LT; Huang JL; Wu PC; Hong MY; Chu FH; Wu JT; Li WH; Chen CY
BMC Genomics; 2016 Mar; 17():220. PubMed ID: 26969372
[TBL] [Abstract][Full Text] [Related]
13. Integrative analysis of ChIP-chip and ChIP-seq dataset.
Zhu LJ
Methods Mol Biol; 2013; 1067():105-24. PubMed ID: 23975789
[TBL] [Abstract][Full Text] [Related]
14. diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates.
Shen L; Shao NY; Liu X; Maze I; Feng J; Nestler EJ
PLoS One; 2013; 8(6):e65598. PubMed ID: 23762400
[TBL] [Abstract][Full Text] [Related]
15. A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.
Han Z; Tian L; Pécot T; Huang T; Machiraju R; Huang K
BMC Bioinformatics; 2012 Mar; 13 Suppl 2(Suppl 2):S2. PubMed ID: 22536865
[TBL] [Abstract][Full Text] [Related]
16. Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data.
wa Maina C; Honkela A; Matarese F; Grote K; Stunnenberg HG; Reid G; Lawrence ND; Rattray M
PLoS Comput Biol; 2014 May; 10(5):e1003598. PubMed ID: 24830797
[TBL] [Abstract][Full Text] [Related]
17. Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments.
Ghosh S; Hirsch HA; Sekinger E; Struhl K; Gingeras TR
BMC Bioinformatics; 2006 Oct; 7():434. PubMed ID: 17022824
[TBL] [Abstract][Full Text] [Related]
18. Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.
Johannes F; Wardenaar R; Colomé-Tatché M; Mousson F; de Graaf P; Mokry M; Guryev V; Timmers HT; Cuppen E; Jansen RC
Bioinformatics; 2010 Apr; 26(8):1000-6. PubMed ID: 20208068
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem.
Hussey SG; Mizrachi E; Groover A; Berger DK; Myburg AA
BMC Plant Biol; 2015 May; 15():117. PubMed ID: 25957781
[TBL] [Abstract][Full Text] [Related]
20. Using CisGenome to analyze ChIP-chip and ChIP-seq data.
Ji H; Jiang H; Ma W; Wong WH
Curr Protoc Bioinformatics; 2011 Mar; Chapter 2():Unit2.13. PubMed ID: 21400695
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
