184 related articles for article (PubMed ID: 20122242)
1. BayesMotif: de novo protein sorting motif discovery from impure datasets.
Hu J; Zhang F
BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S66. PubMed ID: 20122242
[TBL] [Abstract][Full Text] [Related]
2. A Monte Carlo EM algorithm for de novo motif discovery in biomolecular sequences.
Bi C
IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(3):370-86. PubMed ID: 19644166
[TBL] [Abstract][Full Text] [Related]
3. Metamotifs--a generative model for building families of nucleotide position weight matrices.
Piipari M; Down TA; Hubbard TJ
BMC Bioinformatics; 2010 Jun; 11():348. PubMed ID: 20579334
[TBL] [Abstract][Full Text] [Related]
4. GADEM: a genetic algorithm guided formation of spaced dyads coupled with an EM algorithm for motif discovery.
Li L
J Comput Biol; 2009 Feb; 16(2):317-29. PubMed ID: 19193149
[TBL] [Abstract][Full Text] [Related]
5. Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm.
Zhang Z; Chang CW; Hugo W; Cheung E; Sung WK
J Comput Biol; 2013 Mar; 20(3):237-48. PubMed ID: 23461573
[TBL] [Abstract][Full Text] [Related]
6. HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.
Le T; Altman T; Gardiner K
Bioinformatics; 2010 Feb; 26(3):302-9. PubMed ID: 19996163
[TBL] [Abstract][Full Text] [Related]
7. Discriminative motif discovery in DNA and protein sequences using the DEME algorithm.
Redhead E; Bailey TL
BMC Bioinformatics; 2007 Oct; 8():385. PubMed ID: 17937785
[TBL] [Abstract][Full Text] [Related]
8. The value of position-specific priors in motif discovery using MEME.
Bailey TL; Bodén M; Whitington T; Machanick P
BMC Bioinformatics; 2010 Apr; 11():179. PubMed ID: 20380693
[TBL] [Abstract][Full Text] [Related]
9. Finding motifs with insufficient number of strong binding sites.
Leung HC; Chin FY; Yiu SM; Rosenfeld R; Tsang WW
J Comput Biol; 2005; 12(6):686-701. PubMed ID: 16108711
[TBL] [Abstract][Full Text] [Related]
10. Bayesian multiple-instance motif discovery with BAMBI: inference of recombinase and transcription factor binding sites.
Jajamovich GH; Wang X; Arkin AP; Samoilov MS
Nucleic Acids Res; 2011 Nov; 39(21):e146. PubMed ID: 21948794
[TBL] [Abstract][Full Text] [Related]
11. NestedMICA as an ab initio protein motif discovery tool.
Doğruel M; Down TA; Hubbard TJ
BMC Bioinformatics; 2008 Jan; 9():19. PubMed ID: 18194537
[TBL] [Abstract][Full Text] [Related]
12. ARCS-Motif: discovering correlated motifs from unaligned biological sequences.
Zhang S; Su W; Yang J
Bioinformatics; 2009 Jan; 25(2):183-9. PubMed ID: 19073591
[TBL] [Abstract][Full Text] [Related]
13. Unsupervised statistical discovery of spaced motifs in prokaryotic genomes.
Tong H; Schliekelman P; Mrázek J
BMC Genomics; 2017 Jan; 18(1):27. PubMed ID: 28056763
[TBL] [Abstract][Full Text] [Related]
14. Computational identification and analysis of protein short linear motifs.
Davey NE; Edwards RJ; Shields DC
Front Biosci (Landmark Ed); 2010 Jun; 15(3):801-25. PubMed ID: 20515727
[TBL] [Abstract][Full Text] [Related]
15. A correlated motif approach for finding short linear motifs from protein interaction networks.
Tan SH; Hugo W; Sung WK; Ng SK
BMC Bioinformatics; 2006 Nov; 7():502. PubMed ID: 17107624
[TBL] [Abstract][Full Text] [Related]
16. A new algorithm for DNA motif discovery using multiple sample sequence sets.
Yu Q; Zhao X; Huo H
J Bioinform Comput Biol; 2019 Aug; 17(4):1950021. PubMed ID: 31617465
[TBL] [Abstract][Full Text] [Related]
17. SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins.
Edwards RJ; Davey NE; Shields DC
PLoS One; 2007 Oct; 2(10):e967. PubMed ID: 17912346
[TBL] [Abstract][Full Text] [Related]
18. Memetic algorithms for de novo motif-finding in biomedical sequences.
Bi C
Artif Intell Med; 2012 Sep; 56(1):1-17. PubMed ID: 22613029
[TBL] [Abstract][Full Text] [Related]
19. EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.
Hu J; Yang YD; Kihara D
BMC Bioinformatics; 2006 Jul; 7():342. PubMed ID: 16839417
[TBL] [Abstract][Full Text] [Related]
20. Assessment of composite motif discovery methods.
Klepper K; Sandve GK; Abul O; Johansen J; Drablos F
BMC Bioinformatics; 2008 Feb; 9():123. PubMed ID: 18302777
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]