184 related articles for article (PubMed ID: 20122242)
61. Discovering multiple realistic TFBS motifs based on a generalized model.
Chan TM; Li G; Leung KS; Lee KH
BMC Bioinformatics; 2009 Oct; 10():321. PubMed ID: 19811641
[TBL] [Abstract][Full Text] [Related]
62. Efficiently Mining Recurrent Substructures from Protein Three-Dimensional Structure Graphs.
Saidi R; Dhifli W; Maddouri M; Mephu Nguifo E
J Comput Biol; 2019 Jun; 26(6):561-571. PubMed ID: 30517022
[No Abstract] [Full Text] [Related]
63. Greedy mixture learning for multiple motif discovery in biological sequences.
Blekas K; Fotiadis DI; Likas A
Bioinformatics; 2003 Mar; 19(5):607-17. PubMed ID: 12651719
[TBL] [Abstract][Full Text] [Related]
64. Discovering sequence motifs.
Bailey TL
Methods Mol Biol; 2008; 452():231-51. PubMed ID: 18566768
[TBL] [Abstract][Full Text] [Related]
65. Relation between weight matrix and substitution matrix: motif search by similarity.
Zheng WM
Bioinformatics; 2005 Apr; 21(7):938-43. PubMed ID: 15514002
[TBL] [Abstract][Full Text] [Related]
66. Finding exact optimal motifs in matrix representation by partitioning.
Leung HC; Chin FY
Bioinformatics; 2005 Sep; 21 Suppl 2():ii86-92. PubMed ID: 16204132
[TBL] [Abstract][Full Text] [Related]
67. Profile-based short linear protein motif discovery.
Haslam NJ; Shields DC
BMC Bioinformatics; 2012 May; 13():104. PubMed ID: 22607209
[TBL] [Abstract][Full Text] [Related]
68. MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signatures.
Zhang Y; He Y; Zheng G; Wei C
BMC Genomics; 2015; 16 Suppl 7(Suppl 7):S13. PubMed ID: 26099518
[TBL] [Abstract][Full Text] [Related]
69. Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences.
Siebert M; Söding J
Nucleic Acids Res; 2016 Jul; 44(13):6055-69. PubMed ID: 27288444
[TBL] [Abstract][Full Text] [Related]
70. Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.
Kellis M; Patterson N; Birren B; Berger B; Lander ES
J Comput Biol; 2004; 11(2-3):319-55. PubMed ID: 15285895
[TBL] [Abstract][Full Text] [Related]
71. SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model.
Lee NK; Wang D
BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S16. PubMed ID: 21342545
[TBL] [Abstract][Full Text] [Related]
72. Dispom: a discriminative de-novo motif discovery tool based on the jstacs library.
Grau J; Keilwagen J; Gohr A; Paponov IA; Posch S; Seifert M; Strickert M; Grosse I
J Bioinform Comput Biol; 2013 Feb; 11(1):1340006. PubMed ID: 23427988
[TBL] [Abstract][Full Text] [Related]
73. Towards a theoretical understanding of false positives in DNA motif finding.
Zia A; Moses AM
BMC Bioinformatics; 2012 Jun; 13():151. PubMed ID: 22738169
[TBL] [Abstract][Full Text] [Related]
74. DILIMOT: discovery of linear motifs in proteins.
Neduva V; Russell RB
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W350-5. PubMed ID: 16845024
[TBL] [Abstract][Full Text] [Related]
75. Logos: a modular bayesian model for de novo motif detection.
Xing EP; Wu W; Jordan MI; Karp RM
J Bioinform Comput Biol; 2004 Mar; 2(1):127-54. PubMed ID: 15272436
[TBL] [Abstract][Full Text] [Related]
76. PRESnovo: Prescreening Prior to
DeLaney K; Cao W; Ma Y; Ma M; Zhang Y; Li L
J Am Soc Mass Spectrom; 2020 Jul; 31(7):1358-1371. PubMed ID: 32266812
[TBL] [Abstract][Full Text] [Related]
77. FIMO: scanning for occurrences of a given motif.
Grant CE; Bailey TL; Noble WS
Bioinformatics; 2011 Apr; 27(7):1017-8. PubMed ID: 21330290
[TBL] [Abstract][Full Text] [Related]
78. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
Dang LT; Tondl M; Chiu MHH; Revote J; Paten B; Tano V; Tokolyi A; Besse F; Quaife-Ryan G; Cumming H; Drvodelic MJ; Eichenlaub MP; Hallab JC; Stolper JS; Rossello FJ; Bogoyevitch MA; Jans DA; Nim HT; Porrello ER; Hudson JE; Ramialison M
BMC Genomics; 2018 Apr; 19(1):238. PubMed ID: 29621972
[TBL] [Abstract][Full Text] [Related]
79. SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps.
Setty M; Leslie CS
PLoS Comput Biol; 2015 May; 11(5):e1004271. PubMed ID: 26016777
[TBL] [Abstract][Full Text] [Related]
80. Searching for protein signatures using a multilevel alphabet.
Hod R; Kohen R; Mandel-Gutfreund Y
Proteins; 2013 Jun; 81(6):1058-68. PubMed ID: 23386227
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]