These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

804 related articles for article (PubMed ID: 20130030)

  • 1. Identifying biologically relevant differences between metagenomic communities.
    Parks DH; Beiko RG
    Bioinformatics; 2010 Mar; 26(6):715-21. PubMed ID: 20130030
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Visual and statistical comparison of metagenomes.
    Mitra S; Klar B; Huson DH
    Bioinformatics; 2009 Aug; 25(15):1849-55. PubMed ID: 19515961
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes.
    Kristiansson E; Hugenholtz P; Dalevi D
    Bioinformatics; 2009 Oct; 25(20):2737-8. PubMed ID: 19696045
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Metagenomic signatures of 86 microbial and viral metagenomes.
    Willner D; Thurber RV; Rohwer F
    Environ Microbiol; 2009 Jul; 11(7):1752-66. PubMed ID: 19302541
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.
    García Martín H; Ivanova N; Kunin V; Warnecke F; Barry KW; McHardy AC; Yeates C; He S; Salamov AA; Szeto E; Dalin E; Putnam NH; Shapiro HJ; Pangilinan JL; Rigoutsos I; Kyrpides NC; Blackall LL; McMahon KD; Hugenholtz P
    Nat Biotechnol; 2006 Oct; 24(10):1263-9. PubMed ID: 16998472
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Beyond the bounds of orthology: functional inference from metagenomic context.
    Vey G; Moreno-Hagelsieb G
    Mol Biosyst; 2010 Jul; 6(7):1247-54. PubMed ID: 20419183
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions.
    Wang TY; Su CH; Tsai HK
    Bioinformatics; 2011 Dec; 27(24):3341-7. PubMed ID: 22016405
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets.
    Bengtsson J; Hartmann M; Unterseher M; Vaishampayan P; Abarenkov K; Durso L; Bik EM; Garey JR; Eriksson KM; Nilsson RH
    Res Microbiol; 2012 Jul; 163(6-7):407-12. PubMed ID: 22824070
    [TBL] [Abstract][Full Text] [Related]  

  • 10. From bacterial to microbial ecosystems (metagenomics).
    Williamson SJ; Yooseph S
    Methods Mol Biol; 2012; 804():35-55. PubMed ID: 22144147
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Average genome size: a potential source of bias in comparative metagenomics.
    Beszteri B; Temperton B; Frickenhaus S; Giovannoni SJ
    ISME J; 2010 Aug; 4(8):1075-7. PubMed ID: 20336158
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
    Mavromatis K; Ivanova N; Barry K; Shapiro H; Goltsman E; McHardy AC; Rigoutsos I; Salamov A; Korzeniewski F; Land M; Lapidus A; Grigoriev I; Richardson P; Hugenholtz P; Kyrpides NC
    Nat Methods; 2007 Jun; 4(6):495-500. PubMed ID: 17468765
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Metagenomic analysis of intestinal microbiomes in chickens.
    Kim T; Mundt E
    Methods Mol Biol; 2011; 733():185-94. PubMed ID: 21431771
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Introduction to the analysis of environmental sequences: metagenomics with MEGAN.
    Huson DH; Mitra S
    Methods Mol Biol; 2012; 856():415-29. PubMed ID: 22399469
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data.
    Ulyantsev VI; Kazakov SV; Dubinkina VB; Tyakht AV; Alexeev DG
    Bioinformatics; 2016 Sep; 32(18):2760-7. PubMed ID: 27259541
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
    Zakrzewski M; Bekel T; Ander C; Pühler A; Rupp O; Stoye J; Schlüter A; Goesmann A
    J Biotechnol; 2013 Aug; 167(2):156-65. PubMed ID: 23026555
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Megx.net--database resources for marine ecological genomics.
    Lombardot T; Kottmann R; Pfeffer H; Richter M; Teeling H; Quast C; Glöckner FO
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D390-3. PubMed ID: 16381894
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.
    Aßhauer KP; Wemheuer B; Daniel R; Meinicke P
    Bioinformatics; 2015 Sep; 31(17):2882-4. PubMed ID: 25957349
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Community-analyzer: a platform for visualizing and comparing microbial community structure across microbiomes.
    Kuntal BK; Ghosh TS; Mande SS
    Genomics; 2013 Oct; 102(4):409-18. PubMed ID: 23978768
    [TBL] [Abstract][Full Text] [Related]  

  • 20. [A review on the bioinformatics pipelines for metagenomic research].
    Ye DD; Fan MM; Guan Q; Chen HJ; Ma ZS
    Dongwuxue Yanjiu; 2012 Dec; 33(6):574-85. PubMed ID: 23266976
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 41.