These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
144 related articles for article (PubMed ID: 20140072)
1. Predicting consensus structures for RNA alignments via pseudo-energy minimization. Spirollari J; Wang JT; Zhang K; Bellofatto V; Park Y; Shapiro BA Bioinform Biol Insights; 2009 Jun; 3():51-69. PubMed ID: 20140072 [TBL] [Abstract][Full Text] [Related]
2. On comparing two structured RNA multiple alignments. Patel V; Wang JT; Setia S; Verma A; Warden CD; Zhang K J Bioinform Comput Biol; 2010 Dec; 8(6):967-80. PubMed ID: 21121021 [TBL] [Abstract][Full Text] [Related]
3. RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers. Bindewald E; Shapiro BA RNA; 2006 Mar; 12(3):342-52. PubMed ID: 16495232 [TBL] [Abstract][Full Text] [Related]
4. Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments. Seemann SE; Gorodkin J; Backofen R Nucleic Acids Res; 2008 Nov; 36(20):6355-62. PubMed ID: 18836192 [TBL] [Abstract][Full Text] [Related]
5. KnotAli: informed energy minimization through the use of evolutionary information. Gray M; Chester S; Jabbari H BMC Bioinformatics; 2022 May; 23(1):159. PubMed ID: 35505276 [TBL] [Abstract][Full Text] [Related]
7. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation. Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252 [TBL] [Abstract][Full Text] [Related]
8. PROMALS3D web server for accurate multiple protein sequence and structure alignments. Pei J; Tang M; Grishin NV Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W30-4. PubMed ID: 18503087 [TBL] [Abstract][Full Text] [Related]
9. RNAconTest: comparing tools for noncoding RNA multiple sequence alignment based on structural consistency. Wright ES RNA; 2020 May; 26(5):531-540. PubMed ID: 32005745 [TBL] [Abstract][Full Text] [Related]
11. RADAR: a web server for RNA data analysis and research. Khaladkar M; Bellofatto V; Wang JT; Tian B; Shapiro BA Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W300-4. PubMed ID: 17517784 [TBL] [Abstract][Full Text] [Related]
13. Web-Beagle: a web server for the alignment of RNA secondary structures. Mattei E; Pietrosanto M; Ferrè F; Helmer-Citterich M Nucleic Acids Res; 2015 Jul; 43(W1):W493-7. PubMed ID: 25977293 [TBL] [Abstract][Full Text] [Related]
14. StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction. Arunapuram P; Edvardsson I; Golden M; Anderson JW; Novák A; Sükösd Z; Hein J Bioinformatics; 2013 Mar; 29(5):654-5. PubMed ID: 23335014 [TBL] [Abstract][Full Text] [Related]
15. PROMALS web server for accurate multiple protein sequence alignments. Pei J; Kim BH; Tang M; Grishin NV Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345 [TBL] [Abstract][Full Text] [Related]
16. CENTROIDFOLD: a web server for RNA secondary structure prediction. Sato K; Hamada M; Asai K; Mituyama T Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W277-80. PubMed ID: 19435882 [TBL] [Abstract][Full Text] [Related]