179 related articles for article (PubMed ID: 20140074)
1. Gromita: a fully integrated graphical user interface to gromacs 4.
Sellis D; Vlachakis D; Vlassi M
Bioinform Biol Insights; 2009 Sep; 3():99-102. PubMed ID: 20140074
[TBL] [Abstract][Full Text] [Related]
2. Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit.
Vlachakis D; Tsagrasoulis D; Megalooikonomou V; Kossida S
Bioinformatics; 2013 Jan; 29(1):126-8. PubMed ID: 23104887
[TBL] [Abstract][Full Text] [Related]
3. SimHap GUI: an intuitive graphical user interface for genetic association analysis.
Carter KW; McCaskie PA; Palmer LJ
BMC Bioinformatics; 2008 Dec; 9():557. PubMed ID: 19109877
[TBL] [Abstract][Full Text] [Related]
4. MolDy: molecular dynamics simulation made easy.
Khan MI; Pathania S; Al-Rabia MW; Ethayathulla AS; Khan MI; Allemailem KS; Azam M; Hariprasad G; Imran MA
Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38867698
[TBL] [Abstract][Full Text] [Related]
5. DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit.
Vlachakis D; Fakourelis P; Megalooikonomou V; Makris C; Kossida S
PeerJ; 2015; 3():e725. PubMed ID: 25648563
[TBL] [Abstract][Full Text] [Related]
6. gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support.
Irrgang ME; Davis C; Kasson PM
PLoS Comput Biol; 2022 Feb; 18(2):e1009835. PubMed ID: 35157693
[TBL] [Abstract][Full Text] [Related]
7. Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS.
Vieira IHP; Botelho EB; de Souza Gomes TJ; Kist R; Caceres RA; Zanchi FB
BMC Bioinformatics; 2023 Mar; 24(1):107. PubMed ID: 36949402
[TBL] [Abstract][Full Text] [Related]
8. HeroMDAnalysis: an automagical tool for GROMACS-based molecular dynamics simulation analysis.
Rawat R; Kant K; Kumar A; Bhati K; Verma SM
Future Med Chem; 2021 Mar; 13(5):447-456. PubMed ID: 33496197
[No Abstract] [Full Text] [Related]
9. LiGRO: a graphical user interface for protein-ligand molecular dynamics.
Kagami LP; das Neves GM; da Silva AWS; Caceres RA; Kawano DF; Eifler-Lima VL
J Mol Model; 2017 Oct; 23(11):304. PubMed ID: 28980073
[TBL] [Abstract][Full Text] [Related]
10. Enhancing MD simulations: ASGARD's automated analysis for GROMACS.
Rodríguez-Martínez A; Nelen J; Carmena-Bargueño M; Martínez-Cortés C; Luque I; Pérez-Sánchez H
J Biomol Struct Dyn; 2024 May; ():1-13. PubMed ID: 38752848
[TBL] [Abstract][Full Text] [Related]
11. phbuilder: A Tool for Efficiently Setting up Constant pH Molecular Dynamics Simulations in GROMACS.
Jansen A; Aho N; Groenhof G; Buslaev P; Hess B
J Chem Inf Model; 2024 Feb; 64(3):567-574. PubMed ID: 38215282
[TBL] [Abstract][Full Text] [Related]
12. TmoleX--a graphical user interface for TURBOMOLE.
Steffen C; Thomas K; Huniar U; Hellweg A; Rubner O; Schroer A
J Comput Chem; 2010 Dec; 31(16):2967-70. PubMed ID: 20928852
[TBL] [Abstract][Full Text] [Related]
13. Molcontroller: A VMD Graphical User Interface Featuring Molecule Manipulation.
Wu C; Liu S; Zhang S; Yang Z
J Chem Inf Model; 2020 Oct; 60(10):5126-5131. PubMed ID: 32931272
[TBL] [Abstract][Full Text] [Related]
14. Development of a user-friendly system for image processing of electron microscopy by integrating a web browser and PIONE with Eos.
Tsukamoto T; Yasunaga T
Microscopy (Oxf); 2014 Nov; 63 Suppl 1():i32-i33. PubMed ID: 25359837
[TBL] [Abstract][Full Text] [Related]
15. BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations.
Bayarri G; Andrio P; Hospital A; Orozco M; Gelpí JL
Nucleic Acids Res; 2022 Jul; 50(W1):W99-W107. PubMed ID: 35639735
[TBL] [Abstract][Full Text] [Related]
16. CHARMM-GUI: a web-based graphical user interface for CHARMM.
Jo S; Kim T; Iyer VG; Im W
J Comput Chem; 2008 Aug; 29(11):1859-65. PubMed ID: 18351591
[TBL] [Abstract][Full Text] [Related]
17. MEPHAS: an interactive graphical user interface for medical and pharmaceutical statistical analysis with R and Shiny.
Zhou Y; Leung SW; Mizutani S; Takagi T; Tian YS
BMC Bioinformatics; 2020 May; 21(1):183. PubMed ID: 32393166
[TBL] [Abstract][Full Text] [Related]
18. gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations.
Serçinoglu O; Ozbek P
Nucleic Acids Res; 2018 Jul; 46(W1):W554-W562. PubMed ID: 29800260
[TBL] [Abstract][Full Text] [Related]
19. affylmGUI: a graphical user interface for linear modeling of single channel microarray data.
Wettenhall JM; Simpson KM; Satterley K; Smyth GK
Bioinformatics; 2006 Apr; 22(7):897-9. PubMed ID: 16455752
[TBL] [Abstract][Full Text] [Related]
20. ST-analyzer: a web-based user interface for simulation trajectory analysis.
Jeong JC; Jo S; Wu EL; Qi Y; Monje-Galvan V; Yeom MS; Gorenstein L; Chen F; Klauda JB; Im W
J Comput Chem; 2014 May; 35(12):957-63. PubMed ID: 24638223
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]