104 related articles for article (PubMed ID: 20148536)
1. Detection of subtle dynamical changes induced by unresolved "conformational coordinates" in single-molecule trajectories via goodness-of-fit tests.
Calderon CP
J Phys Chem B; 2010 Mar; 114(9):3242-53. PubMed ID: 20148536
[TBL] [Abstract][Full Text] [Related]
2. Bayesian detection of intensity changes in single molecule and molecular dynamics trajectories.
Ensign DL; Pande VS
J Phys Chem B; 2010 Jan; 114(1):280-92. PubMed ID: 20000829
[TBL] [Abstract][Full Text] [Related]
3. Data-driven approach to decomposing complex enzyme kinetics with surrogate models.
Calderon CP
Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Dec; 80(6 Pt 1):061118. PubMed ID: 20365129
[TBL] [Abstract][Full Text] [Related]
4. Collective Langevin dynamics of conformational motions in proteins.
Lange OF; Grubmüller H
J Chem Phys; 2006 Jun; 124(21):214903. PubMed ID: 16774438
[TBL] [Abstract][Full Text] [Related]
5. Estimation and Inference of Diffusion Coefficients in Complex Biomolecular Environments.
Calderon CP
J Chem Theory Comput; 2011 Feb; 7(2):280-90. PubMed ID: 26596151
[TBL] [Abstract][Full Text] [Related]
6. Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics.
Mathiowetz AM; Jain A; Karasawa N; Goddard WA
Proteins; 1994 Nov; 20(3):227-47. PubMed ID: 7892172
[TBL] [Abstract][Full Text] [Related]
7. [Dynamic paradigm in psychopathology: "chaos theory", from physics to psychiatry].
Pezard L; Nandrino JL
Encephale; 2001; 27(3):260-8. PubMed ID: 11488256
[TBL] [Abstract][Full Text] [Related]
8. Fluorescence-based analysis of enzymes at the single-molecule level.
Blank K; De Cremer G; Hofkens J
Biotechnol J; 2009 Apr; 4(4):465-79. PubMed ID: 19229885
[TBL] [Abstract][Full Text] [Related]
9. Manifestations of slow site exchange processes in solution NMR: a continuous Gaussian exchange model.
Schurr JM; Fujimoto BS; Diaz R; Robinson BH
J Magn Reson; 1999 Oct; 140(2):404-31. PubMed ID: 10497047
[TBL] [Abstract][Full Text] [Related]
10. Exact solutions for kinetic models of macromolecular dynamics.
Chemla YR; Moffitt JR; Bustamante C
J Phys Chem B; 2008 May; 112(19):6025-44. PubMed ID: 18373360
[TBL] [Abstract][Full Text] [Related]
11. Freezing a single distal motion in dihydrofolate reductase.
Sergi A; Watney JB; Wong KF; Hammes-Schiffer S
J Phys Chem B; 2006 Feb; 110(5):2435-41. PubMed ID: 16471835
[TBL] [Abstract][Full Text] [Related]
12. Conformational dynamics of cytochrome c: correlation to hydrogen exchange.
García AE; Hummer G
Proteins; 1999 Aug; 36(2):175-91. PubMed ID: 10398365
[TBL] [Abstract][Full Text] [Related]
13. Extending molecular dynamics time scales with milestoning: example of complex kinetics in a solvated peptide.
West AM; Elber R; Shalloway D
J Chem Phys; 2007 Apr; 126(14):145104. PubMed ID: 17444753
[TBL] [Abstract][Full Text] [Related]
14. Conformation spaces of proteins.
Sullivan DC; Kuntz ID
Proteins; 2001 Mar; 42(4):495-511. PubMed ID: 11170204
[TBL] [Abstract][Full Text] [Related]
15. Congruent qualitative behavior of complete and reconstructed phase space trajectories from biomolecular dynamics simulation.
Caves LS; Verma CS
Proteins; 2002 Apr; 47(1):25-30. PubMed ID: 11870862
[TBL] [Abstract][Full Text] [Related]
16. Functionally relevant protein motions: extracting basin-specific collective coordinates from molecular dynamics trajectories.
Pan PW; Dickson RJ; Gordon HL; Rothstein SM; Tanaka S
J Chem Phys; 2005 Jan; 122(3):34904. PubMed ID: 15740224
[TBL] [Abstract][Full Text] [Related]
17. Folding funnels and conformational transitions via hinge-bending motions.
Kumar S; Ma B; Tsai CJ; Wolfson H; Nussinov R
Cell Biochem Biophys; 1999; 31(2):141-64. PubMed ID: 10593256
[TBL] [Abstract][Full Text] [Related]
18. Characterization of enzyme motions by solution NMR relaxation dispersion.
Loria JP; Berlow RB; Watt ED
Acc Chem Res; 2008 Feb; 41(2):214-21. PubMed ID: 18281945
[TBL] [Abstract][Full Text] [Related]
19. Quantum solvation dynamics of HCN in a helium-4 droplet.
Mikosz AA; Ramilowski JA; Farrelly D
J Chem Phys; 2006 Jul; 125(1):014312. PubMed ID: 16863303
[TBL] [Abstract][Full Text] [Related]
20. Two-dimensional reaction free energy surfaces of catalytic reaction: effects of protein conformational dynamics on enzyme catalysis.
Min W; Xie XS; Bagchi B
J Phys Chem B; 2008 Jan; 112(2):454-66. PubMed ID: 18085768
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]