These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

172 related articles for article (PubMed ID: 20158924)

  • 1. Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison.
    Margelevicius M; Venclovas C
    BMC Bioinformatics; 2010 Feb; 11():89. PubMed ID: 20158924
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein homology detection by HMM-HMM comparison.
    Söding J
    Bioinformatics; 2005 Apr; 21(7):951-60. PubMed ID: 15531603
    [TBL] [Abstract][Full Text] [Related]  

  • 3. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
    Teichert F; Minning J; Bastolla U; Porto M
    BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProClust: improved clustering of protein sequences with an extended graph-based approach.
    Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
    Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
    [TBL] [Abstract][Full Text] [Related]  

  • 5. COMPASS server for remote homology inference.
    Sadreyev RI; Tang M; Kim BH; Grishin NV
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W653-8. PubMed ID: 17517780
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DescFold: a web server for protein fold recognition.
    Yan RX; Si JN; Wang C; Zhang Z
    BMC Bioinformatics; 2009 Dec; 10():416. PubMed ID: 20003426
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SCOOP: a simple method for identification of novel protein superfamily relationships.
    Bateman A; Finn RD
    Bioinformatics; 2007 Apr; 23(7):809-14. PubMed ID: 17277330
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
    Yona G; Levitt M
    J Mol Biol; 2002 Feb; 315(5):1257-75. PubMed ID: 11827492
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ASH structure alignment package: sensitivity and selectivity in domain classification.
    Standley DM; Toh H; Nakamura H
    BMC Bioinformatics; 2007 Apr; 8():116. PubMed ID: 17407606
    [TBL] [Abstract][Full Text] [Related]  

  • 10. COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance.
    Sadreyev R; Grishin N
    J Mol Biol; 2003 Feb; 326(1):317-36. PubMed ID: 12547212
    [TBL] [Abstract][Full Text] [Related]  

  • 11. COMA server for protein distant homology search.
    Margelevicius M; Laganeckas M; Venclovas C
    Bioinformatics; 2010 Aug; 26(15):1905-6. PubMed ID: 20529888
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HHsvm: fast and accurate classification of profile-profile matches identified by HHsearch.
    Dlakić M
    Bioinformatics; 2009 Dec; 25(23):3071-6. PubMed ID: 19773335
    [TBL] [Abstract][Full Text] [Related]  

  • 13. dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity.
    Wong WC; Yap CK; Eisenhaber B; Eisenhaber F
    Biol Direct; 2015 Aug; 10():39. PubMed ID: 26228544
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection.
    Liu B; Zhang D; Xu R; Xu J; Wang X; Chen Q; Dong Q; Chou KC
    Bioinformatics; 2014 Feb; 30(4):472-9. PubMed ID: 24318998
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CORAL: aligning conserved core regions across domain families.
    Fong JH; Marchler-Bauer A
    Bioinformatics; 2009 Aug; 25(15):1862-8. PubMed ID: 19470584
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein homology detection and fold inference through multiple alignment entropy profiles.
    Sánchez-Flores A; Pérez-Rueda E; Segovia L
    Proteins; 2008 Jan; 70(1):248-56. PubMed ID: 17671981
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Identification of Protein Homologs and Domain Boundaries by Iterative Sequence Alignment.
    Schaeffer D; Grishin NV
    Methods Mol Biol; 2019; 1851():277-286. PubMed ID: 30298403
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Profile-profile comparisons by COMPASS predict intricate homologies between protein families.
    Sadreyev RI; Baker D; Grishin NV
    Protein Sci; 2003 Oct; 12(10):2262-72. PubMed ID: 14500884
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone.
    Reid AJ; Yeats C; Orengo CA
    Bioinformatics; 2007 Sep; 23(18):2353-60. PubMed ID: 17709341
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.
    Pandit SB; Gosar D; Abhiman S; Sujatha S; Dixit SS; Mhatre NS; Sowdhamini R; Srinivasan N
    Nucleic Acids Res; 2002 Jan; 30(1):289-93. PubMed ID: 11752317
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.