These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. CellML2SBML: conversion of CellML into SBML. Schilstra MJ; Li L; Matthews J; Finney A; Hucka M; Le Novère N Bioinformatics; 2006 Apr; 22(8):1018-20. PubMed ID: 16473867 [TBL] [Abstract][Full Text] [Related]
6. Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model. Nickerson D; Buist M Prog Biophys Mol Biol; 2008 Sep; 98(1):38-51. PubMed ID: 18606438 [TBL] [Abstract][Full Text] [Related]
8. Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts. Wimalaratne SM; Halstead MD; Lloyd CM; Cooling MT; Crampin EJ; Nielsen PF Exp Physiol; 2009 May; 94(5):472-85. PubMed ID: 19151076 [TBL] [Abstract][Full Text] [Related]
9. Data and model integration using JWS Online. van Gend C; Conradie R; du Preez FB; Snoep JL In Silico Biol; 2007; 7(2 Suppl):S27-35. PubMed ID: 17822387 [TBL] [Abstract][Full Text] [Related]
10. BioModels Database: a repository of mathematical models of biological processes. Chelliah V; Laibe C; Le Novère N Methods Mol Biol; 2013; 1021():189-99. PubMed ID: 23715986 [TBL] [Abstract][Full Text] [Related]
11. Temporo-spatial model construction using the MML and software framework. Chang DC; Dokos S; Lovell NH IEEE Trans Biomed Eng; 2011 Dec; 58(12):3528-31. PubMed ID: 21947514 [TBL] [Abstract][Full Text] [Related]
12. CellML and associated tools and techniques. Garny A; Nickerson DP; Cooper J; Weber dos Santos R; Miller AK; McKeever S; Nielsen PM; Hunter PJ Philos Trans A Math Phys Eng Sci; 2008 Sep; 366(1878):3017-43. PubMed ID: 18579471 [TBL] [Abstract][Full Text] [Related]
13. Modular design of synthetic gene circuits with biological parts and pools. Marchisio MA Methods Mol Biol; 2015; 1244():137-65. PubMed ID: 25487096 [TBL] [Abstract][Full Text] [Related]
14. Genetdes: automatic design of transcriptional networks. Rodrigo G; Carrera J; Jaramillo A Bioinformatics; 2007 Jul; 23(14):1857-8. PubMed ID: 17485427 [TBL] [Abstract][Full Text] [Related]
15. An overview of the CellML API and its implementation. Miller AK; Marsh J; Reeve A; Garny A; Britten R; Halstead M; Cooper J; Nickerson DP; Nielsen PF BMC Bioinformatics; 2010 Apr; 11():178. PubMed ID: 20377909 [TBL] [Abstract][Full Text] [Related]
17. Assembly of BioBrick standard biological parts using three antibiotic assembly. Shetty R; Lizarazo M; Rettberg R; Knight TF Methods Enzymol; 2011; 498():311-26. PubMed ID: 21601683 [TBL] [Abstract][Full Text] [Related]
18. Pathway information for systems biology. Cary MP; Bader GD; Sander C FEBS Lett; 2005 Mar; 579(8):1815-20. PubMed ID: 15763557 [TBL] [Abstract][Full Text] [Related]
19. UML as a cell and biochemistry modeling language. Webb K; White T Biosystems; 2005 Jun; 80(3):283-302. PubMed ID: 15888343 [TBL] [Abstract][Full Text] [Related]
20. cPath: open source software for collecting, storing, and querying biological pathways. Cerami EG; Bader GD; Gross BE; Sander C BMC Bioinformatics; 2006 Nov; 7():497. PubMed ID: 17101041 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]