255 related articles for article (PubMed ID: 20161716)
1. mRNA secondary structures fold sequentially but exchange rapidly in vivo.
Mahen EM; Watson PY; Cottrell JW; Fedor MJ
PLoS Biol; 2010 Feb; 8(2):e1000307. PubMed ID: 20161716
[TBL] [Abstract][Full Text] [Related]
2. A DEAD-box RNA helicase promotes thermodynamic equilibration of kinetically trapped RNA structures in vivo.
Ruminski DJ; Watson PY; Mahen EM; Fedor MJ
RNA; 2016 Mar; 22(3):416-27. PubMed ID: 26759451
[TBL] [Abstract][Full Text] [Related]
3. Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast.
Mahen EM; Harger JW; Calderon EM; Fedor MJ
Mol Cell; 2005 Jul; 19(1):27-37. PubMed ID: 15989962
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo.
Rouskin S; Zubradt M; Washietl S; Kellis M; Weissman JS
Nature; 2014 Jan; 505(7485):701-5. PubMed ID: 24336214
[TBL] [Abstract][Full Text] [Related]
5. The kinetic mechanism of the hairpin ribozyme in vivo: influence of RNA helix stability on intracellular cleavage kinetics.
Donahue CP; Yadava RS; Nesbitt SM; Fedor MJ
J Mol Biol; 2000 Jan; 295(3):693-707. PubMed ID: 10623557
[TBL] [Abstract][Full Text] [Related]
6. Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes.
Hegg LA; Fedor MJ
Biochemistry; 1995 Dec; 34(48):15813-28. PubMed ID: 7495813
[TBL] [Abstract][Full Text] [Related]
7. The regulation mechanism of yitJ and metF riboswitches.
Gong S; Wang Y; Zhang W
J Chem Phys; 2015 Jul; 143(4):045103. PubMed ID: 26233166
[TBL] [Abstract][Full Text] [Related]
8. Co-Transcriptional Folding and Regulation Mechanisms of Riboswitches.
Gong S; Wang Y; Wang Z; Zhang W
Molecules; 2017 Jul; 22(7):. PubMed ID: 28703767
[TBL] [Abstract][Full Text] [Related]
9. The dynamic nature of RNA as key to understanding riboswitch mechanisms.
Haller A; Soulière MF; Micura R
Acc Chem Res; 2011 Dec; 44(12):1339-48. PubMed ID: 21678902
[TBL] [Abstract][Full Text] [Related]
10. The Early Folding Intermediates of the Tetrahymena Ribozyme are Kinetically Trapped.
Ralston CY; Sclavi B; Brenowitz M; Sullivan M; Chance MR
J Biomol Struct Dyn; 2000; 17 Suppl 1():195-200. PubMed ID: 22607424
[TBL] [Abstract][Full Text] [Related]
11. Hairpin ribozymes with four-way helical junctions mediate intracellular RNA ligation.
Yadava RS; Choi AJ; Lebruska LL; Fedor MJ
J Mol Biol; 2001 Jun; 309(4):893-902. PubMed ID: 11399066
[TBL] [Abstract][Full Text] [Related]
12. High-Throughput Investigation of Diverse Junction Elements in RNA Tertiary Folding.
Denny SK; Bisaria N; Yesselman JD; Das R; Herschlag D; Greenleaf WJ
Cell; 2018 Jul; 174(2):377-390.e20. PubMed ID: 29961580
[TBL] [Abstract][Full Text] [Related]
13. Design of a highly reactive HDV ribozyme sequence uncovers facilitation of RNA folding by alternative pairings and physiological ionic strength.
Brown TS; Chadalavada DM; Bevilacqua PC
J Mol Biol; 2004 Aug; 341(3):695-712. PubMed ID: 15288780
[TBL] [Abstract][Full Text] [Related]
14. A mechanistic framework for co-transcriptional folding of the HDV genomic ribozyme in the presence of downstream sequence.
Diegelman-Parente A; Bevilacqua PC
J Mol Biol; 2002 Nov; 324(1):1-16. PubMed ID: 12421555
[TBL] [Abstract][Full Text] [Related]
15. Secondary structure prediction and in vitro accessibility of mRNA as tools in the selection of target sites for ribozymes.
Amarzguioui M; Brede G; Babaie E; Grotli M; Sproat B; Prydz H
Nucleic Acids Res; 2000 Nov; 28(21):4113-24. PubMed ID: 11058107
[TBL] [Abstract][Full Text] [Related]
16. Cleavage of full-length beta APP mRNA by hammerhead ribozymes.
Denman RB
Nucleic Acids Res; 1993 Aug; 21(17):4119-25. PubMed ID: 8371986
[TBL] [Abstract][Full Text] [Related]
17. Thermodynamics and kinetics of the hairpin ribozyme from atomistic folding/unfolding simulations.
Nivón LG; Shakhnovich EI
J Mol Biol; 2011 Sep; 411(5):1128-44. PubMed ID: 21740912
[TBL] [Abstract][Full Text] [Related]
18. Direct observation of hierarchical folding in single riboswitch aptamers.
Greenleaf WJ; Frieda KL; Foster DA; Woodside MT; Block SM
Science; 2008 Feb; 319(5863):630-3. PubMed ID: 18174398
[TBL] [Abstract][Full Text] [Related]
19. Determination of intracellular RNA folding rates using self-cleaving RNAs.
Watson PY; Fedor MJ
Methods Enzymol; 2009; 468():259-86. PubMed ID: 20946774
[TBL] [Abstract][Full Text] [Related]
20. Conformational Dynamics of the RNA G-Quadruplex and its Effect on Translation Efficiency.
Endoh T; Sugimoto N
Molecules; 2019 Apr; 24(8):. PubMed ID: 31022854
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
