These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

176 related articles for article (PubMed ID: 20186860)

  • 1. A gradient-directed Monte Carlo approach for protein design.
    Hu X; Hu H; Beratan DN; Yang W
    J Comput Chem; 2010 Aug; 31(11):2164-8. PubMed ID: 20186860
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Improving protein structure prediction with model-based search.
    Brunette TJ; Brock O
    Bioinformatics; 2005 Jun; 21 Suppl 1():i66-74. PubMed ID: 15961500
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Large loop conformation sampling using the activation relaxation technique, ART-nouveau method.
    St-Pierre JF; Mousseau N
    Proteins; 2012 Jul; 80(7):1883-94. PubMed ID: 22488731
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC.
    Nanias M; Chinchio M; Ołdziej S; Czaplewski C; Scheraga HA
    J Comput Chem; 2005 Nov; 26(14):1472-86. PubMed ID: 16088925
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Gibbs adsorption isotherm combined with Monte Carlo sampling to see action of cosolutes on protein folding.
    Harries D; Parsegian VA
    Proteins; 2004 Nov; 57(2):311-21. PubMed ID: 15340918
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Computational design of a single amino acid sequence that can switch between two distinct protein folds.
    Ambroggio XI; Kuhlman B
    J Am Chem Soc; 2006 Feb; 128(4):1154-61. PubMed ID: 16433531
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Folding small proteins via annealing stochastic approximation Monte Carlo.
    Cheon S; Liang F
    Biosystems; 2011 Sep; 105(3):243-9. PubMed ID: 21679746
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A new approach to the design of uniquely folded thermally stable proteins.
    Jiang X; Farid H; Pistor E; Farid RS
    Protein Sci; 2000 Feb; 9(2):403-16. PubMed ID: 10716193
    [TBL] [Abstract][Full Text] [Related]  

  • 9. New Monte Carlo algorithms for protein folding.
    Hansmann UH; Okamoto Y
    Curr Opin Struct Biol; 1999 Apr; 9(2):177-83. PubMed ID: 10322208
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The elastic net algorithm and protein structure prediction.
    Ball KD; Erman B; Dill KA
    J Comput Chem; 2002 Jan; 23(1):77-83. PubMed ID: 11913391
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Effective scoring function for protein sequence design.
    Liang S; Grishin NV
    Proteins; 2004 Feb; 54(2):271-81. PubMed ID: 14696189
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A gradient-directed Monte Carlo method for global optimization in a discrete space: application to protein sequence design and folding.
    Hu X; Beratan DN; Yang W
    J Chem Phys; 2009 Oct; 131(15):154117. PubMed ID: 20568857
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computational approach to de novo discovery of fragment binding for novel protein states.
    Konteatis ZD; Klon AE; Zou J; Meshkat S
    Methods Enzymol; 2011; 493():357-80. PubMed ID: 21371598
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Biased fragment distribution in MC simulation of protein folding.
    Martineau E; L'Heureux PJ; Gunn JR
    J Comput Chem; 2004 Nov; 25(15):1895-903. PubMed ID: 15378533
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 16. De novo protein design. II. Plasticity in sequence space.
    Koehl P; Levitt M
    J Mol Biol; 1999 Nov; 293(5):1183-93. PubMed ID: 10547294
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.
    Zhang Y; Kihara D; Skolnick J
    Proteins; 2002 Aug; 48(2):192-201. PubMed ID: 12112688
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate computer-based design of a new backbone conformation in the second turn of protein L.
    Kuhlman B; O'Neill JW; Kim DE; Zhang KY; Baker D
    J Mol Biol; 2002 Jan; 315(3):471-7. PubMed ID: 11786026
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A Monte Carlo sampling method of amino acid sequences adaptable to given main-chain atoms in the proteins.
    Ogata K; Soejima K; Higo J
    J Biochem; 2006 Oct; 140(4):543-52. PubMed ID: 16945938
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.