BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 20196745)

  • 1. Parameter estimation in multiple-hidden i.i.d. models from biological multiple alignment.
    Arribas-Gil A
    Stat Appl Genet Mol Biol; 2010; 9():Article 10. PubMed ID: 20196745
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A probabilistic model for sequence alignment with context-sensitive indels.
    Hickey G; Blanchette M
    J Comput Biol; 2011 Nov; 18(11):1449-64. PubMed ID: 21951055
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A "Long Indel" model for evolutionary sequence alignment.
    Miklós I; Lunter GA; Holmes I
    Mol Biol Evol; 2004 Mar; 21(3):529-40. PubMed ID: 14694074
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Simultaneous statistical multiple alignment and phylogeny reconstruction.
    Fleissner R; Metzler D; von Haeseler A
    Syst Biol; 2005 Aug; 54(4):548-61. PubMed ID: 16085574
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Phylocomposer and phylodirector: analysis and visualization of transducer indel models.
    Holmes I
    Bioinformatics; 2007 Dec; 23(23):3263-4. PubMed ID: 17804439
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
    Lunter GA; Miklós I; Song YS; Hein J
    J Comput Biol; 2003; 10(6):869-89. PubMed ID: 14980015
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Sequence alignments and pair hidden Markov models using evolutionary history.
    Knudsen B; Miyamoto MM
    J Mol Biol; 2003 Oct; 333(2):453-60. PubMed ID: 14529629
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Ancestral sequence alignment under optimal conditions.
    Hudek AK; Brown DG
    BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Joint Bayesian estimation of alignment and phylogeny.
    Redelings BD; Suchard MA
    Syst Biol; 2005 Jun; 54(3):401-18. PubMed ID: 16012107
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Detection of recombination in DNA multiple alignments with hidden Markov models.
    Husmeier D; Wright F
    J Comput Biol; 2001; 8(4):401-27. PubMed ID: 11571075
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evolutionary inference via the Poisson Indel Process.
    Bouchard-Côté A; Jordan MI
    Proc Natl Acad Sci U S A; 2013 Jan; 110(4):1160-6. PubMed ID: 23275296
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Using evolutionary Expectation Maximization to estimate indel rates.
    Holmes I
    Bioinformatics; 2005 May; 21(10):2294-300. PubMed ID: 15731213
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Detecting distant homologs using phylogenetic tree-based HMMs.
    Qian B; Goldstein RA
    Proteins; 2003 Aug; 52(3):446-53. PubMed ID: 12866055
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An improved algorithm for statistical alignment of sequences related by a star tree.
    Miklós I
    Bull Math Biol; 2002 Jul; 64(4):771-9. PubMed ID: 12216420
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Statistical significance of probabilistic sequence alignment and related local hidden Markov models.
    Yu YK; Hwa T
    J Comput Biol; 2001; 8(3):249-82. PubMed ID: 11535176
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Class of multiple sequence alignment algorithm affects genomic analysis.
    Blackburne BP; Whelan S
    Mol Biol Evol; 2013 Mar; 30(3):642-53. PubMed ID: 23144040
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Phylogenetic distances for neighbour dependent substitution processes.
    Falconnet M
    Math Biosci; 2010 Apr; 224(2):101-8. PubMed ID: 20064534
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Statistical alignment with a sequence evolution model allowing rate heterogeneity along the sequence.
    Arribas-Gil A; Metzler D; Plouhinec JL
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(2):281-95. PubMed ID: 19407352
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.