119 related articles for article (PubMed ID: 20205658)
1. Study on the influences of palindromes in protein coding sequences on the folding rates of peptide chains.
Li RF; Li H
Protein Pept Lett; 2010 Jul; 17(7):881-8. PubMed ID: 20205658
[TBL] [Abstract][Full Text] [Related]
2. The influence of protein coding sequences on protein folding rates of all-β proteins.
Li RF; Li H
Gen Physiol Biophys; 2011 Jun; 30(2):154-61. PubMed ID: 21613670
[TBL] [Abstract][Full Text] [Related]
3. The Influences of Palindromes in mRNA on Protein Folding Rates.
Li R; Li H; Yang S; Feng X
Protein Pept Lett; 2020; 27(4):303-312. PubMed ID: 31612810
[TBL] [Abstract][Full Text] [Related]
4. A tale of two symmetrical tails: structural and functional characteristics of palindromes in proteins.
Sheari A; Kargar M; Katanforoush A; Arab S; Sadeghi M; Pezeshk H; Eslahchi C; Marashi SA
BMC Bioinformatics; 2008 Jun; 9():274. PubMed ID: 18547401
[TBL] [Abstract][Full Text] [Related]
5. Correlation between nucleotide composition and folding energy of coding sequences with special attention to wobble bases.
Biro JC
Theor Biol Med Model; 2008 Jul; 5():14. PubMed ID: 18664268
[TBL] [Abstract][Full Text] [Related]
6. Folding type specific secondary structure propensities of synonymous codons.
Gu W; Zhou T; Ma J; Sun X; Lu Z
IEEE Trans Nanobioscience; 2003 Sep; 2(3):150-7. PubMed ID: 15376949
[TBL] [Abstract][Full Text] [Related]
7. Analyses of the Sequence and Structural Properties Corresponding to Pentapeptide and Large Palindromes in Proteins.
Sridhar S; Nagamruta M; Guruprasad K
PLoS One; 2015; 10(10):e0139568. PubMed ID: 26465610
[TBL] [Abstract][Full Text] [Related]
8. The effects of codon usage on the formation of secondary structures of nucleocapsid protein of peste des petits ruminants virus.
Ma XX; Wang YN; Cao XA; Li XR; Liu YS; Zhou JH; Cai XP
Genes Genomics; 2018 Sep; 40(9):905-912. PubMed ID: 30155714
[TBL] [Abstract][Full Text] [Related]
9. Random coil structures in bacterial proteins. Relationships of their amino acid compositions to flanking structures and corresponding genic base compositions.
Khrustalev VV; Khrustaleva TA; Barkovsky EV
Biochimie; 2013 Sep; 95(9):1745-54. PubMed ID: 23764391
[TBL] [Abstract][Full Text] [Related]
10. Comprehensive structural analysis of designed incomplete polypeptide chains of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus.
Vazquez L; E Lima LMTDR; Almeida MDS
PLoS One; 2017; 12(7):e0182132. PubMed ID: 28750053
[TBL] [Abstract][Full Text] [Related]
11. Amino acid content of beta strands and alpha helices depends on their flanking secondary structure elements.
Khrustalev VV; Khrustaleva TA; Poboinev VV
Biosystems; 2018 Jun; 168():45-54. PubMed ID: 29742459
[TBL] [Abstract][Full Text] [Related]
12. Compositional bias is a major determinant of the distribution pattern and abundance of palindromes in Drosophila melanogaster.
Liu G; Liu J; Zhang B
J Mol Evol; 2012 Oct; 75(3-4):130-40. PubMed ID: 23138634
[TBL] [Abstract][Full Text] [Related]
13. The effects of the synonymous codon usage and tRNA abundance on protein folding of the 3C protease of foot-and-mouth disease virus.
Zhou JH; You YN; Chen HT; Zhang J; Ma LN; Ding YZ; Pejsak Z; Liu YS
Infect Genet Evol; 2013 Jun; 16():270-4. PubMed ID: 23499709
[TBL] [Abstract][Full Text] [Related]
14. Nucleic acid sequences coding for internal antisense peptides: are there implications for protein folding and evolution?
Zull JE; Taylor RC; Michaels GS; Rushforth NB
Nucleic Acids Res; 1994 Aug; 22(16):3373-80. PubMed ID: 8078773
[TBL] [Abstract][Full Text] [Related]
15. The relationship between synonymous codon usage and protein structure.
Xie T; Ding D
FEBS Lett; 1998 Aug; 434(1-2):93-6. PubMed ID: 9738458
[TBL] [Abstract][Full Text] [Related]
16. Widespread position-specific conservation of synonymous rare codons within coding sequences.
Chaney JL; Steele A; Carmichael R; Rodriguez A; Specht AT; Ngo K; Li J; Emrich S; Clark PL
PLoS Comput Biol; 2017 May; 13(5):e1005531. PubMed ID: 28475588
[TBL] [Abstract][Full Text] [Related]
17. Accurate prediction of protein folding rates from sequence and sequence-derived residue flexibility and solvent accessibility.
Gao J; Zhang T; Zhang H; Shen S; Ruan J; Kurgan L
Proteins; 2010 Jul; 78(9):2114-30. PubMed ID: 20455267
[TBL] [Abstract][Full Text] [Related]
18. The relationship between palindrome avoidance and intragenic codon usage variations: a Monte Carlo study.
Fuglsang A
Biochem Biophys Res Commun; 2004 Apr; 316(3):755-62. PubMed ID: 15033465
[TBL] [Abstract][Full Text] [Related]
19. The impact of codon choice on translation process in Saccharomyces cerevisiae: folding class, protein function and secondary structure.
Santoni D
J Theor Biol; 2021 Oct; 526():110806. PubMed ID: 34111456
[TBL] [Abstract][Full Text] [Related]
20. Predicting alpha-helix and beta-strand segments of globular proteins.
Solovyev VV; Salamov AA
Comput Appl Biosci; 1994 Dec; 10(6):661-9. PubMed ID: 7704665
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]