These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

315 related articles for article (PubMed ID: 20208068)

  • 1. Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.
    Johannes F; Wardenaar R; Colomé-Tatché M; Mousson F; de Graaf P; Mokry M; Guryev V; Timmers HT; Cuppen E; Jansen RC
    Bioinformatics; 2010 Apr; 26(8):1000-6. PubMed ID: 20208068
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A hidden Ising model for ChIP-chip data analysis.
    Mo Q; Liang F
    Bioinformatics; 2010 Mar; 26(6):777-83. PubMed ID: 20110277
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Poisson approximation for significance in genome-wide ChIP-chip tiling arrays.
    Zhang Y
    Bioinformatics; 2008 Dec; 24(24):2825-31. PubMed ID: 18953047
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genome-wide analysis of histone modifications by ChIP-on-chip.
    Huebert DJ; Kamal M; O'Donovan A; Bernstein BE
    Methods; 2006 Dec; 40(4):365-9. PubMed ID: 17101450
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ChIP-chip comes of age for genome-wide functional analysis.
    Wu J; Smith LT; Plass C; Huang TH
    Cancer Res; 2006 Jul; 66(14):6899-902. PubMed ID: 16849531
    [TBL] [Abstract][Full Text] [Related]  

  • 6. rMAT--an R/Bioconductor package for analyzing ChIP-chip experiments.
    Droit A; Cheung C; Gottardo R
    Bioinformatics; 2010 Mar; 26(5):678-9. PubMed ID: 20089513
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-wide mapping of protein-DNA interaction by chromatin immunoprecipitation and DNA microarray hybridization (ChIP-chip). Part B: ChIP-chip data analysis.
    Göbel U; Reimer J; Turck F
    Methods Mol Biol; 2010; 631():161-84. PubMed ID: 20204875
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The analysis of ChIP-Seq data.
    Ma W; Wong WH
    Methods Enzymol; 2011; 497():51-73. PubMed ID: 21601082
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A signal-noise model for significance analysis of ChIP-seq with negative control.
    Xu H; Handoko L; Wei X; Ye C; Sheng J; Wei CL; Lin F; Sung WK
    Bioinformatics; 2010 May; 26(9):1199-204. PubMed ID: 20371496
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Epigenetic analysis: ChIP-chip and ChIP-seq.
    Pellegrini M; Ferrari R
    Methods Mol Biol; 2012; 802():377-87. PubMed ID: 22130894
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Combining chromatin immunoprecipitation and oligonucleotide tiling arrays (ChIP-Chip) for functional genomic studies.
    Eeckhoute J; Lupien M; Brown M
    Methods Mol Biol; 2009; 556():155-64. PubMed ID: 19488877
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using ChIP-based technologies to identify epigenetic modifications in disease-relevant cells.
    Falk J
    IDrugs; 2010 Mar; 13(3):169-74. PubMed ID: 20191433
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-wide profiling of DNA-binding proteins using barcode-based multiplex Solexa sequencing.
    Raghav SK; Deplancke B
    Methods Mol Biol; 2012; 786():247-62. PubMed ID: 21938631
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A pipeline for the identification and characterization of chromatin modifications derived from ChIP-Seq datasets.
    Kaspi A; Ziemann M; Rafehi H; Lazarus R; El-Osta A
    Biochimie; 2012 Nov; 94(11):2353-9. PubMed ID: 22705386
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CASSys: an integrated software-system for the interactive analysis of ChIP-seq data.
    Alawi M; Kurtz S; Beckstette M
    J Integr Bioinform; 2011 Jun; 8(2):155. PubMed ID: 21690655
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Stability of histone modifications across mammalian genomes: implications for 'epigenetic' marking.
    Lee BM; Mahadevan LC
    J Cell Biochem; 2009 Sep; 108(1):22-34. PubMed ID: 19623574
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genome-wide mapping of protein-DNA interaction by chromatin immunoprecipitation and DNA microarray hybridization (ChIP-chip). Part A: ChIP-chip molecular methods.
    Reimer JJ; Turck F
    Methods Mol Biol; 2010; 631():139-60. PubMed ID: 20204874
    [TBL] [Abstract][Full Text] [Related]  

  • 18. [Genome-wide analysis of chromatin and transcription factor by ChIP-seq].
    Kurata T
    Tanpakushitsu Kakusan Koso; 2009 Aug; 54(10):1248-55. PubMed ID: 19663251
    [No Abstract]   [Full Text] [Related]  

  • 19. Analyzing ChIP-seq data: preprocessing, normalization, differential identification, and binding pattern characterization.
    Taslim C; Huang K; Huang T; Lin S
    Methods Mol Biol; 2012; 802():275-91. PubMed ID: 22130887
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ChIPing away at the genome: the new frontier travel guide.
    Aleksic J; Russell S
    Mol Biosyst; 2009 Dec; 5(12):1421-8. PubMed ID: 19617957
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.