152 related articles for article (PubMed ID: 20236510)
1. Global and unbiased detection of splice junctions from RNA-seq data.
Ameur A; Wetterbom A; Feuk L; Gyllensten U
Genome Biol; 2010; 11(3):R34. PubMed ID: 20236510
[TBL] [Abstract][Full Text] [Related]
2. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
3. SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data.
Chu C; Li X; Wu Y
BMC Bioinformatics; 2015; 16 Suppl 17(Suppl 17):S10. PubMed ID: 26678515
[TBL] [Abstract][Full Text] [Related]
4. IRcall and IRclassifier: two methods for flexible detection of intron retention events from RNA-Seq data.
Bai Y; Ji S; Wang Y
BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S9. PubMed ID: 25707295
[TBL] [Abstract][Full Text] [Related]
5. Prediction and Quantification of Splice Events from RNA-Seq Data.
Goldstein LD; Cao Y; Pau G; Lawrence M; Wu TD; Seshagiri S; Gentleman R
PLoS One; 2016; 11(5):e0156132. PubMed ID: 27218464
[TBL] [Abstract][Full Text] [Related]
6. Using RNA-Seq to Discover Genetic Polymorphisms That Produce Hidden Splice Variants.
Stein S; Bahrami-Samani E; Xing Y
Methods Mol Biol; 2017; 1648():129-142. PubMed ID: 28766294
[TBL] [Abstract][Full Text] [Related]
7. Observations on novel splice junctions from RNA sequencing data.
Wang L; Wang X; Wang X; Liang Y; Zhang X
Biochem Biophys Res Commun; 2011 Jun; 409(2):299-303. PubMed ID: 21575597
[TBL] [Abstract][Full Text] [Related]
8. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
Li Y; Rao X; Mattox WW; Amos CI; Liu B
PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
[TBL] [Abstract][Full Text] [Related]
9. Widespread splicing of repetitive element loci into coding regions of gene transcripts.
Darby MM; Leek JT; Langmead B; Yolken RH; Sabunciyan S
Hum Mol Genet; 2016 Nov; 25(22):4962-4982. PubMed ID: 28171598
[TBL] [Abstract][Full Text] [Related]
10. RNASequel: accurate and repeat tolerant realignment of RNA-seq reads.
Wilson GW; Stein LD
Nucleic Acids Res; 2015 Oct; 43(18):e122. PubMed ID: 26082497
[TBL] [Abstract][Full Text] [Related]
11. Three novel ABCC5 splice variants in human retina and their role as regulators of ABCC5 gene expression.
Stojic J; Stöhr H; Weber BH
BMC Mol Biol; 2007 May; 8():42. PubMed ID: 17521428
[TBL] [Abstract][Full Text] [Related]
12. PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data.
Zhang Y; Lameijer EW; 't Hoen PA; Ning Z; Slagboom PE; Ye K
Bioinformatics; 2012 Feb; 28(4):479-86. PubMed ID: 22219203
[TBL] [Abstract][Full Text] [Related]
13. A statistical approach for 5' splice site prediction using short sequence motifs and without encoding sequence data.
Meher PK; Sahu TK; Rao AR; Wahi SD
BMC Bioinformatics; 2014 Nov; 15():362. PubMed ID: 25420551
[TBL] [Abstract][Full Text] [Related]
14. Exonization of transposed elements: A challenge and opportunity for evolution.
Schmitz J; Brosius J
Biochimie; 2011 Nov; 93(11):1928-34. PubMed ID: 21787833
[TBL] [Abstract][Full Text] [Related]
15. Discerning novel splice junctions derived from RNA-seq alignment: a deep learning approach.
Zhang Y; Liu X; MacLeod J; Liu J
BMC Genomics; 2018 Dec; 19(1):971. PubMed ID: 30591034
[TBL] [Abstract][Full Text] [Related]
16. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes.
Stein S; Lu ZX; Bahrami-Samani E; Park JW; Xing Y
Nucleic Acids Res; 2015 Dec; 43(22):10612-22. PubMed ID: 26578562
[TBL] [Abstract][Full Text] [Related]
17. Methods to study splicing from high-throughput RNA sequencing data.
Alamancos GP; Agirre E; Eyras E
Methods Mol Biol; 2014; 1126():357-97. PubMed ID: 24549677
[TBL] [Abstract][Full Text] [Related]
18. HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data.
Dimon MT; Sorber K; DeRisi JL
PLoS One; 2010 Nov; 5(11):e13875. PubMed ID: 21079731
[TBL] [Abstract][Full Text] [Related]
19. TopHat: discovering splice junctions with RNA-Seq.
Trapnell C; Pachter L; Salzberg SL
Bioinformatics; 2009 May; 25(9):1105-11. PubMed ID: 19289445
[TBL] [Abstract][Full Text] [Related]
20. A generalized dSpliceType framework to detect differential splicing and differential expression events using RNA-Seq.
Zhu D; Deng N; Bai C
IEEE Trans Nanobioscience; 2015 Mar; 14(2):192-202. PubMed ID: 25680210
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]