These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

534 related articles for article (PubMed ID: 20363979)

  • 1. Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers.
    Gotea V; Visel A; Westlund JM; Nobrega MA; Pennacchio LA; Ovcharenko I
    Genome Res; 2010 May; 20(5):565-77. PubMed ID: 20363979
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Probing transcription factor combinatorics in different promoter classes and in enhancers.
    Vandel J; Cassan O; Lèbre S; Lecellier CH; Bréhélin L
    BMC Genomics; 2019 Feb; 20(1):103. PubMed ID: 30709337
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.
    Lelieveld SH; Schütte J; Dijkstra MJ; Bawono P; Kinston SJ; Göttgens B; Heringa J; Bonzanni N
    Nucleic Acids Res; 2016 May; 44(8):e72. PubMed ID: 26721389
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
    Kim SY; Kim Y
    BMC Bioinformatics; 2006 Jul; 7():330. PubMed ID: 16817975
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes.
    Chatterjee S; Bourque G; Lufkin T
    BMC Dev Biol; 2011 Oct; 11():63. PubMed ID: 22011226
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
    Marinescu VD; Kohane IS; Riva A
    BMC Bioinformatics; 2005 Mar; 6():79. PubMed ID: 15799782
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.
    Hosseinpour B; Bakhtiarizadeh MR; Khosravi P; Ebrahimie E
    Gene; 2013 Dec; 531(2):212-9. PubMed ID: 24042128
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.
    Lee TY; Chang WC; Hsu JB; Chang TH; Shien DM
    BMC Genomics; 2012; 13 Suppl 1(Suppl 1):S3. PubMed ID: 22369687
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
    Berman BP; Pfeiffer BD; Laverty TR; Salzberg SL; Rubin GM; Eisen MB; Celniker SE
    Genome Biol; 2004; 5(9):R61. PubMed ID: 15345045
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.
    Hufton AL; Mathia S; Braun H; Georgi U; Lehrach H; Vingron M; Poustka AJ; Panopoulou G
    Genome Res; 2009 Nov; 19(11):2036-51. PubMed ID: 19704032
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparative promoter region analysis powered by CORG.
    Dieterich C; Grossmann S; Tanzer A; Röpcke S; Arndt PF; Stadler PF; Vingron M
    BMC Genomics; 2005 Feb; 6():24. PubMed ID: 15723697
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bioinformatic prediction of transcription factor binding sites at promoter regions of genes for photoperiod and vernalization responses in model and temperate cereal plants.
    Peng FY; Hu Z; Yang RC
    BMC Genomics; 2016 Aug; 17():573. PubMed ID: 27503086
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.
    Loots G; Ovcharenko I
    Bioinformatics; 2007 Jan; 23(1):122-4. PubMed ID: 17090579
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computation-based discovery of cis-regulatory modules by hidden Markov model.
    Wu J; Xie J
    J Comput Biol; 2008 Apr; 15(3):279-90. PubMed ID: 18333759
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Information content differentiates enhancers from silencers in mouse photoreceptors.
    Friedman RZ; Granas DM; Myers CA; Corbo JC; Cohen BA; White MA
    Elife; 2021 Sep; 10():. PubMed ID: 34486522
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Systematic interrogation of human promoters.
    Weingarten-Gabbay S; Nir R; Lubliner S; Sharon E; Kalma Y; Weinberger A; Segal E
    Genome Res; 2019 Feb; 29(2):171-183. PubMed ID: 30622120
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mouse transgenesis identifies conserved functional enhancers and cis-regulatory motif in the vertebrate LIM homeobox gene Lhx2 locus.
    Lee AP; Brenner S; Venkatesh B
    PLoS One; 2011; 6(5):e20088. PubMed ID: 21629789
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evolutionary origins of transcription factor binding site clusters.
    He X; Duque TS; Sinha S
    Mol Biol Evol; 2012 Mar; 29(3):1059-70. PubMed ID: 22075113
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Disruptions in a cluster of computationally identified enhancers near FOXC1 and GMDS may influence brain development.
    Haliburton GD; McKinsey GL; Pollard KS
    Neurogenetics; 2016 Jan; 17(1):1-9. PubMed ID: 26382291
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Functionally conserved enhancers with divergent sequences in distant vertebrates.
    Yang S; Oksenberg N; Takayama S; Heo SJ; Poliakov A; Ahituv N; Dubchak I; Boffelli D
    BMC Genomics; 2015 Oct; 16():882. PubMed ID: 26519295
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 27.