These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

166 related articles for article (PubMed ID: 20367083)

  • 1. Enhanced sampling of nonequilibrium steady states.
    Dickson A; Dinner AR
    Annu Rev Phys Chem; 2010; 61():441-59. PubMed ID: 20367083
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Separating forward and backward pathways in nonequilibrium umbrella sampling.
    Dickson A; Warmflash A; Dinner AR
    J Chem Phys; 2009 Oct; 131(15):154104. PubMed ID: 20568844
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Nonequilibrium umbrella sampling in spaces of many order parameters.
    Dickson A; Warmflash A; Dinner AR
    J Chem Phys; 2009 Feb; 130(7):074104. PubMed ID: 19239281
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Simulating the kinetics and thermodynamics of transitions via forward flux/umbrella sampling.
    Borrero EE; Escobedo FA
    J Phys Chem B; 2009 May; 113(18):6434-45. PubMed ID: 19402728
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Flow-Dependent Unfolding and Refolding of an RNA by Nonequilibrium Umbrella Sampling.
    Dickson A; Maienschein-Cline M; Tovo-Dwyer A; Hammond JR; Dinner AR
    J Chem Theory Comput; 2011 Sep; 7(9):2710-20. PubMed ID: 26605464
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Biased sampling of nonequilibrium trajectories: can fast switching simulations outperform conventional free energy calculation methods?
    Oberhofer H; Dellago C; Geissler PL
    J Phys Chem B; 2005 Apr; 109(14):6902-15. PubMed ID: 16851777
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Umbrella sampling for nonequilibrium processes.
    Warmflash A; Bhimalapuram P; Dinner AR
    J Chem Phys; 2007 Oct; 127(15):154112. PubMed ID: 17949137
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Automatic, optimized interface placement in forward flux sampling simulations.
    Kratzer K; Arnold A; Allen RJ
    J Chem Phys; 2013 Apr; 138(16):164112. PubMed ID: 23635116
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computing stationary distributions in equilibrium and nonequilibrium systems with forward flux sampling.
    Valeriani C; Allen RJ; Morelli MJ; Frenkel D; Rein ten Wolde P
    J Chem Phys; 2007 Sep; 127(11):114109. PubMed ID: 17887830
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimizing the sampling and staging for simulations of rare events via forward flux sampling schemes.
    Borrero EE; Escobedo FA
    J Chem Phys; 2008 Jul; 129(2):024115. PubMed ID: 18624524
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Simulating rare events in equilibrium or nonequilibrium stochastic systems.
    Allen RJ; Frenkel D; ten Wolde PR
    J Chem Phys; 2006 Jan; 124(2):024102. PubMed ID: 16422566
    [TBL] [Abstract][Full Text] [Related]  

  • 12. From transition paths to transition states and rate coefficients.
    Hummer G
    J Chem Phys; 2004 Jan; 120(2):516-23. PubMed ID: 15267886
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Statistical mechanical theory for steady state systems. V. Nonequilibrium probability density.
    Attard P
    J Chem Phys; 2006 Jun; 124(22):224103. PubMed ID: 16784259
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Forward flux sampling for rare event simulations.
    Allen RJ; Valeriani C; Rein Ten Wolde P
    J Phys Condens Matter; 2009 Nov; 21(46):463102. PubMed ID: 21715864
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Nonequilibrium dynamics and umbrella sampling.
    Williams SR; Evans DJ
    Phys Rev Lett; 2010 Sep; 105(11):110601. PubMed ID: 20867558
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Non-stationary forward flux sampling.
    Becker NB; Allen RJ; ten Wolde PR
    J Chem Phys; 2012 May; 136(17):174118. PubMed ID: 22583221
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Importance sampling large deviations in nonequilibrium steady states. I.
    Ray U; Chan GK; Limmer DT
    J Chem Phys; 2018 Mar; 148(12):124120. PubMed ID: 29604886
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An efficient umbrella potential for the accurate calculation of free energies by molecular simulation.
    Wu D
    J Chem Phys; 2010 Jul; 133(4):044115. PubMed ID: 20687641
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Reaction coordinates and transition pathways of rare events via forward flux sampling.
    Borrero EE; Escobedo FA
    J Chem Phys; 2007 Oct; 127(16):164101. PubMed ID: 17979313
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Rosenbluth-sampled nonequilibrium work method for calculation of free energies in molecular simulation.
    Wu D; Kofke DA
    J Chem Phys; 2005 May; 122(20):204104. PubMed ID: 15945710
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.