229 related articles for article (PubMed ID: 20377890)
1. Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays.
Stiglic G; Bajgot M; Kokol P
BMC Bioinformatics; 2010 Apr; 11():176. PubMed ID: 20377890
[TBL] [Abstract][Full Text] [Related]
2. Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.
Mane SP; Evans C; Cooper KL; Crasta OR; Folkerts O; Hutchison SK; Harkins TT; Thierry-Mieg D; Thierry-Mieg J; Jensen RV
BMC Genomics; 2009 Jun; 10():264. PubMed ID: 19523228
[TBL] [Abstract][Full Text] [Related]
3. Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis.
Zhang L; Zhang J; Yang G; Wu D; Jiang L; Wen Z; Li M
BMC Bioinformatics; 2013 Apr; 14():143. PubMed ID: 23627640
[TBL] [Abstract][Full Text] [Related]
4. Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.
Chen JJ; Hsueh HM; Delongchamp RR; Lin CJ; Tsai CA
BMC Bioinformatics; 2007 Oct; 8():412. PubMed ID: 17961233
[TBL] [Abstract][Full Text] [Related]
5. The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.
Shi L; Jones WD; Jensen RV; Harris SC; Perkins RG; Goodsaid FM; Guo L; Croner LJ; Boysen C; Fang H; Qian F; Amur S; Bao W; Barbacioru CC; Bertholet V; Cao XM; Chu TM; Collins PJ; Fan XH; Frueh FW; Fuscoe JC; Guo X; Han J; Herman D; Hong H; Kawasaki ES; Li QZ; Luo Y; Ma Y; Mei N; Peterson RL; Puri RK; Shippy R; Su Z; Sun YA; Sun H; Thorn B; Turpaz Y; Wang C; Wang SJ; Warrington JA; Willey JC; Wu J; Xie Q; Zhang L; Zhang L; Zhong S; Wolfinger RD; Tong W
BMC Bioinformatics; 2008 Aug; 9 Suppl 9(Suppl 9):S10. PubMed ID: 18793455
[TBL] [Abstract][Full Text] [Related]
6. Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study.
Arikawa E; Sun Y; Wang J; Zhou Q; Ning B; Dial SL; Guo L; Yang J
BMC Genomics; 2008 Jul; 9():328. PubMed ID: 18620571
[TBL] [Abstract][Full Text] [Related]
7. Detecting discordance enrichment among a series of two-sample genome-wide expression data sets.
Lai Y; Zhang F; Nayak TK; Modarres R; Lee NH; McCaffrey TA
BMC Genomics; 2017 Jan; 18(Suppl 1):1050. PubMed ID: 28198679
[TBL] [Abstract][Full Text] [Related]
8. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
Bemmo A; Benovoy D; Kwan T; Gaffney DJ; Jensen RV; Majewski J
BMC Genomics; 2008 Nov; 9():529. PubMed ID: 18990248
[TBL] [Abstract][Full Text] [Related]
9. Comparative study of gene set enrichment methods.
Abatangelo L; Maglietta R; Distaso A; D'Addabbo A; Creanza TM; Mukherjee S; Ancona N
BMC Bioinformatics; 2009 Sep; 10():275. PubMed ID: 19725948
[TBL] [Abstract][Full Text] [Related]
10. Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells.
Maouche S; Poirier O; Godefroy T; Olaso R; Gut I; Collet JP; Montalescot G; Cambien F
BMC Genomics; 2008 Jun; 9():302. PubMed ID: 18578872
[TBL] [Abstract][Full Text] [Related]
11. Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.
Maruschke M; Reuter D; Koczan D; Hakenberg OW; Thiesen HJ
BJU Int; 2011 Jul; 108(2 Pt 2):E29-35. PubMed ID: 21435154
[TBL] [Abstract][Full Text] [Related]
12. Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.
Wang Y; Barbacioru C; Hyland F; Xiao W; Hunkapiller KL; Blake J; Chan F; Gonzalez C; Zhang L; Samaha RR
BMC Genomics; 2006 Mar; 7():59. PubMed ID: 16551369
[TBL] [Abstract][Full Text] [Related]
13. Evaluation of oligonucleotide sequence capture arrays and comparison of next-generation sequencing platforms for use in molecular diagnostics.
Hoppman-Chaney N; Peterson LM; Klee EW; Middha S; Courteau LK; Ferber MJ
Clin Chem; 2010 Aug; 56(8):1297-306. PubMed ID: 20562348
[TBL] [Abstract][Full Text] [Related]
14. Rat toxicogenomic study reveals analytical consistency across microarray platforms.
Guo L; Lobenhofer EK; Wang C; Shippy R; Harris SC; Zhang L; Mei N; Chen T; Herman D; Goodsaid FM; Hurban P; Phillips KL; Xu J; Deng X; Sun YA; Tong W; Dragan YP; Shi L
Nat Biotechnol; 2006 Sep; 24(9):1162-9. PubMed ID: 17061323
[TBL] [Abstract][Full Text] [Related]
15. Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples.
Wen Z; Wang C; Shi Q; Huang Y; Su Z; Hong H; Tong W; Shi L
BMC Bioinformatics; 2010 Oct; 11 Suppl 6(Suppl 6):S10. PubMed ID: 20946593
[TBL] [Abstract][Full Text] [Related]
16. Evaluating methods for ranking differentially expressed genes applied to microArray quality control data.
Kadota K; Shimizu K
BMC Bioinformatics; 2011 Jun; 12():227. PubMed ID: 21639945
[TBL] [Abstract][Full Text] [Related]
17. A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis.
Chen J; Agrawal V; Rattray M; West MA; St Clair DA; Michelmore RW; Coughlan SJ; Meyers BC
BMC Genomics; 2007 Nov; 8():414. PubMed ID: 17997849
[TBL] [Abstract][Full Text] [Related]
18. Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets.
Lai Y; Zhang F; Nayak TK; Modarres R; Lee NH; McCaffrey TA
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S6. PubMed ID: 24564564
[TBL] [Abstract][Full Text] [Related]
19. Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
Carter SL; Eklund AC; Mecham BH; Kohane IS; Szallasi Z
BMC Bioinformatics; 2005 Apr; 6():107. PubMed ID: 15850491
[TBL] [Abstract][Full Text] [Related]
20. Gene set enrichment analysis for non-monotone association and multiple experimental categories.
Lin R; Dai S; Irwin RD; Heinloth AN; Boorman GA; Li L
BMC Bioinformatics; 2008 Nov; 9():481. PubMed ID: 19014579
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]